PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g10590.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HB-other

Protein Properties

Length: 1628aa MW: 183616 Da PI: 6.2978

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g10590.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	41	96	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+ +r+eL++klgL++rq ++WF+ rR k+kk Vradi10g10590.1 41 PKRQMKTPFQLETLEKAYAVENYPSEMMRAELSEKLGLSDRQLQMWFCHRRLKDKK 96 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.3E-19	20	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-17	28	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.714	37	97	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	39	101	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-16	41	96	IPR001356	Homeobox domain
CDD	cd00086	2.11E-14	42	96	No hit	No description
PROSITE profile	PS50827	17.048	548	607	IPR018501	DDT domain
SMART	SM00571	8.5E-23	548	607	IPR018501	DDT domain
Pfam	PF02791	1.9E-17	550	604	IPR018501	DDT domain
Pfam	PF05066	2.5E-12	730	784	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.3E-9	813	856	IPR028942	WHIM1 domain
Pfam	PF15613	3.4E-14	993	1066	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1628 aa Download sequence Send to blast
MEAEPENNEV KREENSNDDN NNNNNESNSK FGNSSEGQSK PKRQMKTPFQ LETLEKAYAV 60 ENYPSEMMRA ELSEKLGLSD RQLQMWFCHR RLKDKKDLPS KKLRKAAALT DSPVEEPKLA 120 SEVGAEYGSG SGSGSSPFTR SELRNVVPRG YYESPQTIME LRAIACVEAQ LGEPLREDGP 180 ILGVEFDPLP PDAFGAPLAV TDPQKRPSLA YENKVYERHD VRTNKAIART FHEYPFLPTQ 240 SGIRSDVFGQ LNLPHLHEPM EGPARTPFPL GNEQPRIHAP QSHSSRVRLL SQPQDKQVIP 300 YPSPPRENDV VPKREPHINI TNTGMNSHYA TDHPIVGQEI PYALPGGQVS HNDAVLRMER 360 KRKIDEARVA KEVEAYEMRM RKELEKQDNL RRKSEERLKK EMERQDRERR KEEERLLREK 420 QREEERSKRE QRREMERREK FLLKEHLRAE KRRQKEEIRK EKEEERRKAA LEKANARRIA 480 KESMELIEDE QLELMELAAA SKGLSSIIHI DLDTLQNLES FRDSLCVFPP KSVKLRKPFA 540 IQPWSNSEQN VGNLLMVWRF LITFADVLDL WPFTLDEFVQ AFHDYDSRLL GEIHVALLKV 600 IIKDIEDVAR TPSTGLGMNQ NGAANPGGGH PEIVEGAYAW GFDIRNWQKN LNQLTWPEIF 660 RQLALSAGLG PHLKKRSIAW SYTIDKDEGK SCVDIISTLR NGSAAESAVA KMQERGLLAP 720 RRSRHRLTPG TVKFAAFHVL SLEGSKGLTV LELAEKIQKS GLRDLTTSKT PEASISVALT 780 RDTKFSVTRP VASGDLNAGN LDQDNMEIDE SISGESWILG LAEGEYSDLS VEERLNALVA 840 LVGVANEGNS IRVVLEDRLE SANALKKQMW ADAQIDKVRL KDDNISKLDF PSITGNKVET 900 QYTYPAAEGH QSPIMLDINI NNNEASPSTA ENQKGAPVGL SMPMEKSSSV QDFGSGTGAD 960 IPQTQVPVQY SKRSRSQLKS YFAHLAEEMY VYRSLPLGQD RRRNRYWQFV ASASSSDPGS 1020 GRIFVECHDD GKWWLIDSEE AFDSLLTSLD SRGLRESHLR LMLQRIESSF KENVRKRNAH 1080 CAKNGSRGEV SIKVEANEPF SIPDHNAGSD SPSSILYDLN TDTSEVSSSF KIELGKSESE 1140 KKAALRRYHD FQKWLWKECY NSSVLCAMKY GIKRCKPQMD ICDICLDLYF VEDSHCSSCH 1200 RTFSSNNGFN FSKHAFQCRD KLSKDNCILE YSLPLRTRLL KILLACMEVS VLSEAFGTNW 1260 TDDIRKHWGV KLSKSSSVEE LIQILTLFEK ALRRDFLSSN FSTTDELLGS SSTLECSGQA 1320 STDPETVPVL PWVPLTTAAL SLRLFEIDSS ISYVKPERLE PSEEKEAREY IRFPSRYTHL 1380 KSNREVEPAE FDHDEFAKDK SVPKKIVRSG NKRSRGTNEQ GRGKKLAKRV YNSKRDGGRK 1440 NAKVTVNLSH KLKQQARGTQ GQGAGRGRRT VRKRRVGKRA VEDLLLGHTT ASHSSKIDRE 1500 PLKNLDEEWD GQKASPMTPV HIGVAADNSN SAEEVESDYD HAQAVEYDQG NWEVGFNGVP 1560 PNRWSGDLVG MSDEDVDASE DDNDNGIEEN EDEDSEADVM SEGSDGMGNR VVNVGGSYSA 1620 LSEDSSD*

Sequence ? help Back to Top

Protein Sequence Length: 1628 aa Download sequence Send to blast

MEAEPENNEV KREENSNDDN NNNNNESNSK FGNSSEGQSK PKRQMKTPFQ LETLEKAYAV  60
ENYPSEMMRA ELSEKLGLSD RQLQMWFCHR RLKDKKDLPS KKLRKAAALT DSPVEEPKLA  120
SEVGAEYGSG SGSGSSPFTR SELRNVVPRG YYESPQTIME LRAIACVEAQ LGEPLREDGP  180
ILGVEFDPLP PDAFGAPLAV TDPQKRPSLA YENKVYERHD VRTNKAIART FHEYPFLPTQ  240
SGIRSDVFGQ LNLPHLHEPM EGPARTPFPL GNEQPRIHAP QSHSSRVRLL SQPQDKQVIP  300
YPSPPRENDV VPKREPHINI TNTGMNSHYA TDHPIVGQEI PYALPGGQVS HNDAVLRMER  360
KRKIDEARVA KEVEAYEMRM RKELEKQDNL RRKSEERLKK EMERQDRERR KEEERLLREK  420
QREEERSKRE QRREMERREK FLLKEHLRAE KRRQKEEIRK EKEEERRKAA LEKANARRIA  480
KESMELIEDE QLELMELAAA SKGLSSIIHI DLDTLQNLES FRDSLCVFPP KSVKLRKPFA  540
IQPWSNSEQN VGNLLMVWRF LITFADVLDL WPFTLDEFVQ AFHDYDSRLL GEIHVALLKV  600
IIKDIEDVAR TPSTGLGMNQ NGAANPGGGH PEIVEGAYAW GFDIRNWQKN LNQLTWPEIF  660
RQLALSAGLG PHLKKRSIAW SYTIDKDEGK SCVDIISTLR NGSAAESAVA KMQERGLLAP  720
RRSRHRLTPG TVKFAAFHVL SLEGSKGLTV LELAEKIQKS GLRDLTTSKT PEASISVALT  780
RDTKFSVTRP VASGDLNAGN LDQDNMEIDE SISGESWILG LAEGEYSDLS VEERLNALVA  840
LVGVANEGNS IRVVLEDRLE SANALKKQMW ADAQIDKVRL KDDNISKLDF PSITGNKVET  900
QYTYPAAEGH QSPIMLDINI NNNEASPSTA ENQKGAPVGL SMPMEKSSSV QDFGSGTGAD  960
IPQTQVPVQY SKRSRSQLKS YFAHLAEEMY VYRSLPLGQD RRRNRYWQFV ASASSSDPGS  1020
GRIFVECHDD GKWWLIDSEE AFDSLLTSLD SRGLRESHLR LMLQRIESSF KENVRKRNAH  1080
CAKNGSRGEV SIKVEANEPF SIPDHNAGSD SPSSILYDLN TDTSEVSSSF KIELGKSESE  1140
KKAALRRYHD FQKWLWKECY NSSVLCAMKY GIKRCKPQMD ICDICLDLYF VEDSHCSSCH  1200
RTFSSNNGFN FSKHAFQCRD KLSKDNCILE YSLPLRTRLL KILLACMEVS VLSEAFGTNW  1260
TDDIRKHWGV KLSKSSSVEE LIQILTLFEK ALRRDFLSSN FSTTDELLGS SSTLECSGQA  1320
STDPETVPVL PWVPLTTAAL SLRLFEIDSS ISYVKPERLE PSEEKEAREY IRFPSRYTHL  1380
KSNREVEPAE FDHDEFAKDK SVPKKIVRSG NKRSRGTNEQ GRGKKLAKRV YNSKRDGGRK  1440
NAKVTVNLSH KLKQQARGTQ GQGAGRGRRT VRKRRVGKRA VEDLLLGHTT ASHSSKIDRE  1500
PLKNLDEEWD GQKASPMTPV HIGVAADNSN SAEEVESDYD HAQAVEYDQG NWEVGFNGVP  1560
PNRWSGDLVG MSDEDVDASE DDNDNGIEEN EDEDSEADVM SEGSDGMGNR VVNVGGSYSA  1620
LSEDSSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	96	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g10590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014518296.1	0.0	homeobox-DDT domain protein RLT1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2Z6MDX4	0.0	A0A2Z6MDX4_TRISU; Uncharacterized protein
STRING	XP_007148118.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF30713	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1