PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g07480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 759aa    MW: 85412.3 Da    PI: 7.4206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g07480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.23.8e-1181815332356
             GRAS   2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +e+L +cA+avs+gd e a  ++++ l +++s  gdp+qRl ay++e+L+arl +s+s +ykal++++ +   s++ +++++++++++P+ kf+
  Vradi10g07480.1 181 KEVLSRCAQAVSDGDIETAVGFMNNvLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPA---SKDLMSYMHILYQICPYWKFA 271
                      7899*******************8726788***************************************9...99999**************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN  I ea+ +e+r+HiiDf+i qG+QW+ L++aLasRp+g+p +R+Tgv+++es+  +   l  +g+rL+++A++ +vpfef+  +a + 
  Vradi10g07480.1 272 YVSANAVIGEAMLNESRIHIIDFQIAQGTQWMLLIDALASRPGGTPFIRVTGVDDSESFhaRGGGLDIVGKRLSDYAKSRRVPFEFHS-AAMSG 364
                      *******************************************************9999889999***********************.89999 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       ++ele+L v pgEalaVn+ + lh+++desvs+e++rd++L+lvk+lsPkvv++veqe+++n+++F++rf+e+l+yysa+f+s+++ lpre++
  Vradi10g07480.1 365 CEVELENLVVLPGEALAVNFPFVLHHMPDESVSTENHRDRLLRLVKNLSPKVVTLVEQESNTNTSPFFQRFVESLSYYSAMFESIDVALPREDK 458
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                      +ri+ E+++++r+ivn++aceg er+erhe l+kWr+r+++aGF p pls+++++ ++ +lr+++++ yr+e+ +g
  Vradi10g07480.1 459 QRISAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGN-YRLEHIDG 533
                      *****************************************************************77.*9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.322154532IPR005202Transcription factor GRAS
PfamPF035141.3E-115181533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MQTSQKHPTS SGFDLYHQPV QNVDPYTRYQ VLQSNSCHEI HNSNSQGTTI SFQPCKEQYF  60
TLESSPALND LIGCDSPSYA SVSSNSNRSP FSPHASHSYH SDQHQSSDNN YGSPTSAHSS  120
ADDSYELKHK LRELEISLLG PDSEIVDSCH CCYEGGHHGA SAMAKYNWDQ VVEMIPKLDL  180
KEVLSRCAQA VSDGDIETAV GFMNNVLPKM VSVGGDPIQR LGAYMLEGLR ARLESSGSLI  240
YKALKCEQPA SKDLMSYMHI LYQICPYWKF AYVSANAVIG EAMLNESRIH IIDFQIAQGT  300
QWMLLIDALA SRPGGTPFIR VTGVDDSESF HARGGGLDIV GKRLSDYAKS RRVPFEFHSA  360
AMSGCEVELE NLVVLPGEAL AVNFPFVLHH MPDESVSTEN HRDRLLRLVK NLSPKVVTLV  420
EQESNTNTSP FFQRFVESLS YYSAMFESID VALPREDKQR ISAEQHCVAR DIVNMIACEG  480
PERVERHELL GKWRSRFSMA GFAPCPLSSS VTNAVRNMLR EFNGNYRLEH IDGRGELRRM  540
QREQERERRR IRDRQRRQSM TQEQRERHLA RRRRNYQLRR QRAANAHLPY TSFPQFQPPE  600
SSAGEASTSD ELQGLPSPTF AEYGIFPQVI GFPHHHLNLG QQMLNMGTKL LQGSSVPLET  660
LLCKPANSPK LMRLNHVRGL ARNLTHSIVN PPCTRLVASE LIPKEHQDVS VGSTVKSLRL  720
NCVKRLARSK NSFYEETAYE NDLKFPAGEF SYLLARTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-5121453236353GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1545555RERRRIRDRQR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g07480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022642307.10.0scarecrow-like protein 13
RefseqXP_022642308.10.0scarecrow-like protein 13
RefseqXP_022642309.10.0scarecrow-like protein 13
RefseqXP_022642310.10.0scarecrow-like protein 13
RefseqXP_022642311.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A3Q0FJ830.0A0A3Q0FJ83_VIGRR; scarecrow-like protein 13
STRINGXP_007147638.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13