PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g06480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 856aa MW: 93871 Da PI: 6.1432 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Vradi10g06480.1 18 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP | |||||||
2 | START | 173.2 | 1.6e-54 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +e+l + +g g+++l Vradi10g06480.1 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRQSWYRDCRCVEVLSIVPTGngGTIEL 259 68999*****************************************************.8888888888************************* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 m+++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ s +vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+ Vradi10g06480.1 260 MYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppSTTFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRP 353 *****************************************999999999******************************************** PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s+ + ++k + a+lq+ + Vradi10g06480.1 354 LYESSKILAQKLTIAALQHIR 374 ******************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.71 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-16 | 15 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-16 | 18 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-16 | 18 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.16E-16 | 18 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.81E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 26.343 | 157 | 358 | IPR002913 | START domain |
CDD | cd08875 | 1.37E-70 | 161 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.6E-22 | 165 | 349 | IPR023393 | START-like domain |
SMART | SM00234 | 3.3E-51 | 166 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.79E-37 | 167 | 378 | No hit | No description |
Pfam | PF01852 | 6.1E-52 | 167 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-5 | 414 | 499 | No hit | No description |
SuperFamily | SSF55961 | 1.92E-5 | 527 | 605 | No hit | No description |
Pfam | PF08670 | 1.2E-48 | 710 | 854 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MALTLHKDSA NNQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGYMKQ 120 QIQTASAGTT TDNSCESVVM SGQNQQQNPT PQHPNRDANN PAGLLAIAEE TLAEFLSKAT 180 GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRQSWYRDC 240 RCVEVLSIVP TGNGGTIELM YMQTYAPTTL AAARDFWTLR YTTSLEDGSL VICERSLTSS 300 TGGPTGPPST TFVRAEMLPS GYLIRPCEGG GSIIHIVDHI DLDVWSVPEV LRPLYESSKI 360 LAQKLTIAAL QHIRQIAQES SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFVDDGWSL 420 MGTDGVEDVT IAVNSSPNKF LGSNYNASMF PAFGGGVLCA KASMLLQNVP PALLVRFLRE 480 HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPSSQVIL PLAHTIEHEE FLEVVRIEGH 540 AFSPEDVTLA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP 600 KSVECRELSR LDGPAATRTL DLASTMEVGS ANARPAGEAD LNGYNLRSVL TIAFQFTFEN 660 HTRDNVAAMA RQYVRSVVGS VQRVAMAIAP SRLSTQLGPK SLPGSPEALT LARWISRSYR 720 IHTGTELFRA ESTAGDAILK QLWHHSDAIM CCSVKTNASP VFTFANQAGL DMLETTLVAL 780 QDIMLDKVLD ESGRKILCSE FSKIMQQGFA YLPAGICVSS MNRPVSYEQA IAWKVLNDDD 840 SNHCLAFMFM SWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g06480.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518680.1 | 0.0 | homeobox-leucine zipper protein ATHB-14 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A1S3VK68 | 0.0 | A0A1S3VK68_VIGRR; homeobox-leucine zipper protein ATHB-14 | ||||
STRING | GLYMA15G13640.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |