PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g06370.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 272aa    MW: 30179.1 Da    PI: 5.136
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g06370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.8e-28189241153
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYe 53 
                      ldDgy+WrKYGqK vk+s++prsYYrCt++gC vkk+vers++dp++ve  ++
  Vradi10g06370.1 189 LDDGYKWRKYGQKAVKNSPYPRSYYRCTTTGCGVKKRVERSSDDPSIVEHANR 241
                      59*********************************************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-28174237IPR003657WRKY domain
SuperFamilySSF1182903.27E-24181237IPR003657WRKY domain
PROSITE profilePS5081125.614184249IPR003657WRKY domain
SMARTSM007742.9E-29189240IPR003657WRKY domain
PfamPF031066.1E-21190237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAEEKREEEA HPNNEPSTTM AFSDEIPNNF TFPSQPLTIF DAMPPPPFSS SCDIKVSPFG  60
FLDLLGVHDY HAPLFDWPPS AAPSRASSNV PDSSEVLNTP ASPNLSSISS SSNEATATAT  120
TTTRAEQSGK GGFEHEEAEA EEEEEGGNGG REDQDQDKTK KQLKPKKKNQ KKQREPRFAF  180
MTKSEVDHLD DGYKWRKYGQ KAVKNSPYPR SYYRCTTTGC GVKKRVERSS DDPSIVEHAN  240
RRGFGHEALL RDNGLLQDII VPSQVRKEEN D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-23179236764Probable WRKY transcription factor 4
2lex_A3e-23179236764Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g06370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518105.11e-128probable WRKY transcription factor 48
TrEMBLA0A1S3VIJ21e-173A0A1S3VIJ2_VIGRR; probable WRKY transcription factor 48
STRINGXP_007147378.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-36WRKY DNA-binding protein 48