PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g05910.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 707aa    MW: 78609.9 Da    PI: 6.7016
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g05910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-162779456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++++q+ +Le++ + +++p++++r++LA+++gL+ rq+k+WFqN+R++ k
  Vradi10g05910.1 27 YKRLSSSQTSRLERFIKDCPHPDEAQRRQLAAEIGLEPRQIKFWFQNKRTQIK 79
                     567899*******************************************9988 PP
2START127.91.2e-402254462206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                      +a +a++elv+++  +ep+W kss s++g+ +l  +  +k             ++ea ++sg+v  ++ +lv  +ld+  +W + ++    kae
  Vradi10g05910.1 225 VAATAMDELVRLVRINEPFWIKSS-SPDGKLCLLLENYQKMfpktkhfkgpnVRIEATKESGIVSINSLQLVDMFLDSD-KWVNLFPtmvsKAE 316
                      6889********************.4555444444433333444444677889**************************.88887777777*** PP

                      EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
            START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                      t++vi+ g      galqlmv+++ +lsp v  R+f f+R+++q  ++++vi+dvS ds q++p   s+  + ++pSg+li++++ng + vtwv
  Vradi10g05910.1 317 TVKVIERGlpgnrsGALQLMVQQMHVLSPFVQpREFQFLRFCQQ-IEEGLVIADVSFDSFQQKP---SIFQSWKHPSGCLIQEMPNGCCMVTWV 406
                      *****************************8766***********.9999**********99988...7************************** PP

                      E-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 168 ehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      ehv++++++  h l++ ++ +g+a ga +w   lqr ce+
  Vradi10g05910.1 407 EHVEVDDKIQiHPLYKDIIVKGVAYGAERWIMELQRMCER 446
                      ********988***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-171283IPR009057Homeodomain-like
SuperFamilySSF466894.15E-161685IPR009057Homeodomain-like
PROSITE profilePS5007115.7912181IPR001356Homeobox domain
SMARTSM003895.9E-172385IPR001356Homeobox domain
PfamPF000463.6E-142679IPR001356Homeobox domain
CDDcd000861.77E-162982No hitNo description
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PROSITE profilePS5084843.691215449IPR002913START domain
SuperFamilySSF559613.02E-30217448No hitNo description
CDDcd088753.43E-96219445No hitNo description
SMARTSM002341.8E-31224446IPR002913START domain
PfamPF018524.1E-34225446IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-8278411IPR023393START-like domain
SuperFamilySSF559614.4E-11478702No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MDSSMASAGA SADEGSQNHN NGRKTSYKRL SSSQTSRLER FIKDCPHPDE AQRRQLAAEI  60
GLEPRQIKFW FQNKRTQIKN QHERADNTAL RVENDRIHTE NVTMQEALKS MLCPSCGGPP  120
CLEGDREHAI HNMRLENMHL KEEHEKVSRL LSRYLESQML PPDQFQQGFF PIIGSSSNAA  180
ALGNPLNQVI GGSSSHDPNL ALHMMDGGHN FLASEGIEKN LMAKVAATAM DELVRLVRIN  240
EPFWIKSSSP DGKLCLLLEN YQKMFPKTKH FKGPNVRIEA TKESGIVSIN SLQLVDMFLD  300
SDKWVNLFPT MVSKAETVKV IERGLPGNRS GALQLMVQQM HVLSPFVQPR EFQFLRFCQQ  360
IEEGLVIADV SFDSFQQKPS IFQSWKHPSG CLIQEMPNGC CMVTWVEHVE VDDKIQIHPL  420
YKDIIVKGVA YGAERWIMEL QRMCERFAAF YLEKIPDHDA AGVINSLEGR RSIMNFSHRM  480
LKIFCESITM ADGLDFPLCD LVNTSGVRVS IRESKINGQP SGMIVAAATS IWLPIHYMKV  540
FEFFLDDKNR AQWDVLTCGN QAHKVANISN GIHPGNCVSV IRPFIPSENN ALILQESFTT  600
PMGSYVIYAP TDVATMTAAI MGENSSMLPV LPSGFVICPD GEPNSAMGAF DGADTERSGG  660
SLLTVAFQIL ASADGRNMPN RKAGAAVNSL LTSTILRVRD AFNCNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g05910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517364.10.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A1S3VGX70.0A0A1S3VGX7_VIGRR; homeobox-leucine zipper protein HDG11-like
STRINGXP_007147460.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11