PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g05890.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 624aa    MW: 70946.1 Da    PI: 7.7978
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g05890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.8e-173384556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     + ++++ +  Lee+F+k+++p+++ r ++A++lgL+ +qVk+WFqN+R++ k
  Vradi10g05890.1 33 HGHNSDRTSKLEEMFRKCPHPTKSIRLQMAEELGLEPKQVKFWFQNKRTQIK 84
                     556788999***************************************9987 PP
2START129.44.4e-412174352206
                      HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      +a +a +el+k+ + +ep Wvkss         e++q+f +  +       ++e +++s vv  ++++lv  +l++   W+  +     ka t+
  Vradi10g05890.1 217 IAVTAKEELIKLLCTNEPIWVKSSdhqRFVLHLESYQTFFPRINhfknsqARVESSKDSLVVRIQAMKLVDMFLNSE-HWTDLFStivtKARTI 309
                      788999******************655223356666666665557788888**************************.55555555555***** PP

                      EEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
            START  83 evissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      +vi++g    g+l lm+ e+ +lsplvp R+  f+Ry++q +a++wvivdvSvd ++ ++ ++ + +   +pSg++i++ sn  + + wvehv+
  Vradi10g05890.1 310 KVIENGsnrsGVLLLMSEEMHVLSPLVPsRELFFLRYCEQIEAHSWVIVDVSVDCTTGNN-NPTYWK---FPSGCIIHEISNELCWISWVEHVE 399
                      ***********************************************************9.8****9...************************ PP

                      --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      +++++  h+l++ +v++++a ga +w+  lqr c++
  Vradi10g05890.1 400 VDEKIEtHQLYKDIVNNSIAYGAERWLLELQRMCAR 435
                      *****99*************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-171587IPR009057Homeodomain-like
SuperFamilySSF466897.1E-162191IPR009057Homeodomain-like
PROSITE profilePS5007115.8072686IPR001356Homeobox domain
SMARTSM003895.9E-142790IPR001356Homeobox domain
CDDcd000862.96E-132986No hitNo description
PfamPF000461.7E-143384IPR001356Homeobox domain
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PROSITE profilePS5084839.477207438IPR002913START domain
SuperFamilySSF559611.02E-25208436No hitNo description
CDDcd088751.21E-86211434No hitNo description
SMARTSM002341.1E-27216435IPR002913START domain
PfamPF018529.9E-35217435IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MDFAMGAAGG SGDDDKHKHS HNKSSNKGKK AYHGHNSDRT SKLEEMFRKC PHPTKSIRLQ  60
MAEELGLEPK QVKFWFQNKR TQIKTQTERI NNNIFRIENE RIRKDNLLLR EAFKNITCAT  120
CGGPSNDENR KHSLEQLRLE NARLREELER LPNALAKYMD KSVLDLNMMN YTLMRGSSSR  180
APLIPGSYLR LNGSCEDTML NRGRRITQME KTMMSQIAVT AKEELIKLLC TNEPIWVKSS  240
DHQRFVLHLE SYQTFFPRIN HFKNSQARVE SSKDSLVVRI QAMKLVDMFL NSEHWTDLFS  300
TIVTKARTIK VIENGSNRSG VLLLMSEEMH VLSPLVPSRE LFFLRYCEQI EAHSWVIVDV  360
SVDCTTGNNN PTYWKFPSGC IIHEISNELC WISWVEHVEV DEKIETHQLY KDIVNNSIAY  420
GAERWLLELQ RMCARFTSFG DEIPDYDING VITAMGGRKN MIKFSHGMLK NFYGILNISS  480
KTECLEHLAE ENTDIMPLHR TANNTAIIQE SYIDALGSYV VYSPVNISDV KMAVNGEDPA  540
RMSIFPSGIV ISKDVQSITH ASAWSSGSGD KRTHGTLMTM AFQILMNGPT TMVAESKTVI  600
KSLMTSTIQN INHALINGSN LEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g05890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-162AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517363.20.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A1S3VG820.0A0A1S3VG82_VIGRR; homeobox-leucine zipper protein HDG11-like
STRINGXP_007147461.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-104homeodomain GLABROUS 11