PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g05660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 352aa    MW: 38700.4 Da    PI: 8.6172
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g05660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.71.9e-16169225359
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                      + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+l   ++ + + 
  Vradi10g05660.1 169 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLLKRLTDVNQRYNSA 225
                      689******************************************999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.3E-13165222No hitNo description
SMARTSM003389.0E-20167231IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.542169223IPR004827Basic-leucine zipper domain
PfamPF001704.0E-14170222IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.15E-12171221No hitNo description
PROSITE patternPS000360174189IPR004827Basic-leucine zipper domain
PfamPF124988.9E-28238344IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MERVLSVDEI SEQYWVAAKK ESCKSKSKMN RSESEWAFQQ FLQEAVSPSS SSSSDVKPKN  60
DPDINMNIPV TLNVDSHDYQ TILKTKLNLA CAAVALSRGS LVKSQNPTTF PDSGSQASVP  120
SEVGTLKDSL QKKAGVAVRP TLSASSREQS DDEEAEEEIN MSGKMNTTDA KRVRRMLSNR  180
ESARRSRRRK QAHLTELETQ VSQLRGENSS LLKRLTDVNQ RYNSAAVDNR VLKADVETLR  240
AKVKMAEETV KRISGLNPMF HGMSEMSAME IAMFDESRSE TSGGGAVPVQ EDPNHKLCEA  300
KNGLGGICSV KSVQQKVTTV VGWGGNSLHR VASLEHLQKR IRGDEDSRGD Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183190RRSRRRKQ
2185190SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g05660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-150AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516865.10.0light-inducible protein CPRF2 isoform X1
SwissprotQ990902e-88CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1S3VF150.0A0A1S3VF15_VIGRR; light-inducible protein CPRF2 isoform X1
STRINGXP_007147170.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-64bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]