PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g05570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 125aa    MW: 13980.9 Da    PI: 6.768
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g05570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.9e-1612743499
                     SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 34 ktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                     +++ +++ ++g+ W+vk+  +   g+ v+++GW+eF+k+++L++ Df+vF++dg+++f  +vk+f k
  Vradi10g05570.1 12 IQMEIRNeQDGKHWDVKV--EIIEGGLVFKSGWQEFAKEKKLEDCDFLVFEYDGKTTF--NVKIFGK 74
                     45666665899*******..99999***************************997777..9**9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0092175IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464175IPR003340B3 DNA binding domain
CDDcd100171.37E-121172No hitNo description
PfamPF023625.6E-131374IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-161977IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-162077IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MQVGKHCVCG SIQMEIRNEQ DGKHWDVKVE IIEGGLVFKS GWQEFAKEKK LEDCDFLVFE  60
YDGKTTFNVK IFGKTGCRKV AAPPKVVPIV NLEEDSDEHS NEIQNNGVRK RPLPSSKTNV  120
KSEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g05570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-156AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022642858.12e-70putative B3 domain-containing protein At5g66980
TrEMBLA0A3Q0FGJ04e-69A0A3Q0FGJ0_VIGRR; putative B3 domain-containing protein At5g66980
STRINGXP_007147158.16e-42(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-10B3 family protein