PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g04790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 512aa    MW: 55434.4 Da    PI: 9.8382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g04790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05127149123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F r  nL+ H r H
  Vradi10g04790.1 127 FVCEICNKGFQRDQNLQLHRRGH 149
                      89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-6126149No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5126149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949127149IPR007087Zinc finger, C2H2
PfamPF121718.2E-5127149IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SMARTSM0035596168198IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-4191224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-6198223No hitNo description
SMARTSM00355150203223IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
GEFRGFCPYT FIFFLRFCSH FPLARRRVKR STSLGRKRRG SMSNSNITSC DSWSFSTENT  60
GEDAAAAAAL KHHSPNSNTS TTTNNSNASN TNSQPPHKKK RNLPGNPDPN AEVVALSPNT  120
LVATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKLRTT TEVKKRVYVC PEPSCVHHNP  180
ARALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVHSDWKA HSKICGTKEY KCDCGTIFSR  240
RDSFITHRAF CDALSDDSNK FNEAGQLQSI MHGSNLQPPM IPNLAASLPI NTNNHKQPLP  300
LPHELIAAIP AKPFNSNMAA LPRSLSSTSS PSQLCSNSPH INMLEEKPQT NMSATALLQK  360
AAQMGATVNS NSNSNGMMTE TGFATSMAPP SYGVMNHHIH HGQQDLSQYN FHANGTVMMD  420
GGGNGMGGMS GLDMFNAILD QSKALSKIIE QNNRSSYSGV LHAMNNGRSS SIDVGGTKGS  480
DQDVMTLDLL GIGGGVGGGG GGGVGDGSFF GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-32199257361Zinc finger protein JACKDAW
5b3h_F7e-32199257361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12438RRRVKRSTSLGRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g04790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517114.10.0protein indeterminate-domain 2
TrEMBLA0A1S3VG710.0A0A1S3VG71_VIGRR; protein indeterminate-domain 2
STRINGXP_007147037.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-95C2H2 family protein