PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g04790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 512aa MW: 55434.4 Da PI: 9.8382 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vradi10g04790.1 127 FVCEICNKGFQRDQNLQLHRRGH 149 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.37E-6 | 126 | 149 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 126 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 127 | 149 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.2E-5 | 127 | 149 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 96 | 168 | 198 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.6E-4 | 191 | 224 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.37E-6 | 198 | 223 | No hit | No description |
SMART | SM00355 | 150 | 203 | 223 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
GEFRGFCPYT FIFFLRFCSH FPLARRRVKR STSLGRKRRG SMSNSNITSC DSWSFSTENT 60 GEDAAAAAAL KHHSPNSNTS TTTNNSNASN TNSQPPHKKK RNLPGNPDPN AEVVALSPNT 120 LVATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKLRTT TEVKKRVYVC PEPSCVHHNP 180 ARALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVHSDWKA HSKICGTKEY KCDCGTIFSR 240 RDSFITHRAF CDALSDDSNK FNEAGQLQSI MHGSNLQPPM IPNLAASLPI NTNNHKQPLP 300 LPHELIAAIP AKPFNSNMAA LPRSLSSTSS PSQLCSNSPH INMLEEKPQT NMSATALLQK 360 AAQMGATVNS NSNSNGMMTE TGFATSMAPP SYGVMNHHIH HGQQDLSQYN FHANGTVMMD 420 GGGNGMGGMS GLDMFNAILD QSKALSKIIE QNNRSSYSGV LHAMNNGRSS SIDVGGTKGS 480 DQDVMTLDLL GIGGGVGGGG GGGVGDGSFF GG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-32 | 199 | 257 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 7e-32 | 199 | 257 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 38 | RRRVKRSTSLGRKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g04790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517114.1 | 0.0 | protein indeterminate-domain 2 | ||||
TrEMBL | A0A1S3VG71 | 0.0 | A0A1S3VG71_VIGRR; protein indeterminate-domain 2 | ||||
STRING | XP_007147037.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-95 | C2H2 family protein |