PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g03470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 229aa MW: 25780.2 Da PI: 6.7256 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 30 | 74 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E +l+ +a + + ++ +W+++a++++ g+t +++ + Vradi10g03470.1 30 KWTPAENKLFENALAVYDKDtpdRWHKVAEMIP-GKTVMDVVKQYK 74 8********************************.***998887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.121 | 23 | 77 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 24 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-9 | 27 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.68E-12 | 29 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-8 | 30 | 76 | No hit | No description |
Pfam | PF00249 | 9.4E-7 | 30 | 74 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MKWEMEILPP ASPYMYSSNW LLDDNRTNTK WTPAENKLFE NALAVYDKDT PDRWHKVAEM 60 IPGKTVMDVV KQYKELEADV CNIEAGLIPI PGYSTTTSPF TLDWVNTPGY DGFKGLTAKR 120 SSSGRPPEQE RKKGVPWTEE EHNSLHEASF VGGWLFLLGL KKYGKGIAMA LNPAHEQVFV 180 SPYGLNSYGF KVQGQSLHRS PLHESSYLGP QTPNMVFQMQ PSQHYSHA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-18 | 31 | 103 | 11 | 83 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g03470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518898.1 | 1e-108 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-62 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3VKK1 | 1e-107 | A0A1S3VKK1_VIGRR; transcription factor DIVARICATA | ||||
STRING | XP_007146740.1 | 1e-104 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40735 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-54 | MYB family protein |
Publications ? help Back to Top | |||
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