PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g02570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 547aa    MW: 61221.2 Da    PI: 5.1658
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g02570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.52.6e-1311765461374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+e L++cA+a++ +d+e +++++++ ++++s +g+p+qRl ay++e L ar+a+s+s++yk+l++se +     e l+++++++ev+P++kf+
  Vradi10g02570.1 176 LKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYIVESLVARMADSGSTIYKSLKCSEPT---GNELLSYMHVLYEVCPYFKFG 266
                      5789*****************************************************************9...99******************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +l aN aI ea+++e++vHiiDf+isqG+QW++L++aLa Rp+gpp++Ri gv+++ s+  +   l  +g+rL+ +Ae+++vpfefn+ v    
  Vradi10g02570.1 267 YLSANGAIAEALKEESEVHIIDFQISQGTQWVSLIHALAHRPGGPPKIRISGVDDSFSSyaRGGGLDIVGKRLSALAESCNVPFEFNA-VRVPA 359
                      *******************************************************776688999************************.7999* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++l++L+++p Ea+aVn++++lh+++d sv+ +++rd++L+l k+l+Pkvv++veqe ++n+++Fl+rf+e+++yy a+fds++a  pre++
  Vradi10g02570.1 360 SQVQLKDLELRPYEAVAVNFAIMLHHVPDASVNGHNHRDRLLRLAKHLNPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSIDAARPREDK 453
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      eri+vE+++l+re+vn++aceg+er+erhe l+kWr+r+++aGF+p+pl++++++++k ll+ ++++ y+++e++g+l+lgWk++ L++ +aWr
  Vradi10g02570.1 454 ERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTDAGFSPYPLNSFINSSIKDLLQSYHGH-YTLQEKDGALFLGWKNQVLIASCAWR 546
                      *****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.346150527IPR005202Transcription factor GRAS
PfamPF035148.8E-129176546IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MQTSQNHKIS YGSGGFYVEP VQNLESYCLP SSENIDNYSS SDNSSQTTYP SVQTLEQYCT  60
LESASTSNSF PCQNSPPALS FSSNNSPLSK IESNSYVLRP QHSLEIASGP PENDPYTILD  120
LDDLSHKMRE LETAMLGPNV DMLDIYGALM PGEADSILLE AEKWKKMMEM VSRGDLKEML  180
YTCAKAMAVN DMETTEWMMS ESRKMVSVSG NPIQRLGAYI VESLVARMAD SGSTIYKSLK  240
CSEPTGNELL SYMHVLYEVC PYFKFGYLSA NGAIAEALKE ESEVHIIDFQ ISQGTQWVSL  300
IHALAHRPGG PPKIRISGVD DSFSSYARGG GLDIVGKRLS ALAESCNVPF EFNAVRVPAS  360
QVQLKDLELR PYEAVAVNFA IMLHHVPDAS VNGHNHRDRL LRLAKHLNPK VVTLVEQEFN  420
TNNAPFLQRF VETMNYYLAV FDSIDAARPR EDKERINVEQ HCLAREVVNL IACEGEERVE  480
RHELLNKWRM RFTDAGFSPY PLNSFINSSI KDLLQSYHGH YTLQEKDGAL FLGWKNQVLI  540
ASCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6018354526378Protein SCARECROW
5b3h_A3e-6018354525377Protein SCARECROW
5b3h_D3e-6018354525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g02570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519023.10.0scarecrow-like protein 21
RefseqXP_014519024.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1S3VLR30.0A0A1S3VLR3_VIGRR; scarecrow-like protein 21
STRINGXP_007146593.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]