PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g00680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 246aa    MW: 28443.6 Da    PI: 5.8383
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g00680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-193587456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++f++eq++ Le  Fe ++++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Vradi10g00680.1 35 KRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 87
                     568*************************************************9 PP
2HD-ZIP_I/II122.32.5e-3933125193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+s+eq+++LE  Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+ + e+L+ke+e+L+ el++
  Vradi10g00680.1  33 ENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLACRFESLKKEKESLQVELQK 125
                      58**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-191089IPR009057Homeodomain-like
SuperFamilySSF466892.21E-182189IPR009057Homeodomain-like
PROSITE profilePS5007117.5242989IPR001356Homeobox domain
SMARTSM003893.0E-163293IPR001356Homeobox domain
CDDcd000868.12E-143590No hitNo description
PfamPF000466.9E-173587IPR001356Homeobox domain
PRINTSPR000318.7E-66069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000318.7E-66985IPR000047Helix-turn-helix motif
PfamPF021838.3E-1189129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMEGDENIQA SKGKNVESFS SLEAPRKKNK KIENKRRFSD EQIRSLECIF ETESKLEPRK  60
KMQLARDLGL QPRQVAIWFQ NRRARWKSKR IEQEYRKLKD EYDNLACRFE SLKKEKESLQ  120
VELQKLSDLV VSSHDGGRED KGAKEHSIED GGSGSGYSSW KPEAKPRFSN EGLEDRVGVY  180
SDDQNENSIM RSEKSEDKGH QLLRMDDNDH AEMPLASLEK WYSSVDPNGI LDQSCSSSQW  240
LDFWT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g00680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935440.0BT093544.1 Soybean clone JCVI-FLGm-17O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517123.11e-180homeobox-leucine zipper protein ATHB-12
TrEMBLA0A1S3VFI41e-179A0A1S3VFI4_VIGRR; homeobox-leucine zipper protein ATHB-12
STRINGXP_007136490.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-42homeobox 7