PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi09g08990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 258aa MW: 29438.9 Da PI: 10.2748 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 90.3 | 2.3e-28 | 38 | 132 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 lfqr+ws eDe+++L+G+ +f +ktg++p+ +idaf++f+kks++++vs++ql +KirrLKkKf++ ++k+k+g p+ + hd + skki Vradi09g08990.1 38 LFQRIWSAEDELSILKGIPEFISKTGQEPYWHIDAFHNFIKKSLHVEVSSHQLKDKIRRLKKKFETYEAKKKKGILPR-LRFHDGVLYAQSKKI 130 69********************************************************************77776655.5789*********** PP DUF573 96 Wg 97 Wg Vradi09g08990.1 131 WG 132 *8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.9E-25 | 39 | 132 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MRKKPKQRPT PKPAEAPSPS VANDKTEEDG TGGQAKVLFQ RIWSAEDELS ILKGIPEFIS 60 KTGQEPYWHI DAFHNFIKKS LHVEVSSHQL KDKIRRLKKK FETYEAKKKK GILPRLRFHD 120 GVLYAQSKKI WGERATELVE KPKPLAKTKT QKKESEAKAK VPTQKKESEA KTKVPGQPSA 180 SESGDVSLLY SNISCFKELD EDEMKRGLTL IEESKRKELE RRWKVLQYSE MELLVNRSLL 240 IGEQIKLISE ALQSSNN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 1 | 7 | RKKPKQR |
2 | 1 | 8 | RKKPKQRP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi09g08990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-131 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515080.1 | 1e-179 | STOREKEEPER protein-like | ||||
TrEMBL | A0A1S3V9Z7 | 1e-177 | A0A1S3V9Z7_VIGRR; STOREKEEPER protein-like | ||||
STRING | XP_007151503.1 | 1e-91 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-20 | DNA-binding storekeeper protein-related transcriptional regulator |