PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi09g06710.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 198aa MW: 22841.9 Da PI: 8.4786

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi09g06710.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.8e-24	42	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk+ GF vr ++ ++s+ +++i++r+f C+k+g++ + ++kt+ +++r++ r gC+a++ vk + gkw+vtk+++eH+H l+ Vradi09g06710.1 42 NFYEKYAKHEGFVVRLDRCHRSEVDNRIISRRFSCNKQGFHVRVRNKTKPVHKPRTSIREGCEAMMLVKVK-CGKWVVTKFVKEHSHLLN 130 6*****************************************9999******************9.9************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-21	42	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
DLEAVAETVE NSNDQISAAF ESSSIGEPNV GMEFESEEAA KNFYEKYAKH EGFVVRLDRC 60 HRSEVDNRII SRRFSCNKQG FHVRVRNKTK PVHKPRTSIR EGCEAMMLVK VKCGKWVVTK 120 FVKEHSHLLN ASGSPSYSKM IESKDRIIQQ LTKELEYRDR LCQQYRRQLF SLLETVEEQT 180 ESLSKNVELV VNNIRNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi09g06710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014516120.1	1e-145	protein FAR1-RELATED SEQUENCE 12 isoform X1
TrEMBL	A0A1S3VCX3	1e-144	A0A1S3VCX3_VIGRR; protein FAR1-RELATED SEQUENCE 12 isoform X1
STRING	XP_007134265.1	1e-134	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-53	FAR1 family protein