PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g06080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 237aa    MW: 26786.5 Da    PI: 6.5131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g06080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00039831023655
                      S-STCHHHHHHHHHHHHHHH CS
              HLH  36 kKlsKaeiLekAveYIksLq 55 
                      + ++K+++L kA+eY+k L+
  Vradi09g06080.1  83 TSMDKVTVLNKAIEYVKCLE 102
                      5689*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-582117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-884116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDQMDDESWQ KWVSILEEND CHTLTEEFKR DSSVVPAEDS LKESSLRISS LEKNTGFYMT  60
SLTQQHASSQ KPKSCVLSFE NFTSMDKVTV LNKAIEYVKC LEQRVNDLEK ENKKRKIESS  120
EGCLKVRKSK MVGYEFSWSS DACYDDHKAT NKCSKVEARV AGKDVLIRVT CEMQRNVLQN  180
VMAKLEAHNL SLVSTNVLPF GNSALTITTI AQMNPKFTTT VDNFVKTLTE DLSKVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g06080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-134AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516125.11e-106transcription factor bHLH18
RefseqXP_014516133.11e-106transcription factor bHLH18-like
TrEMBLA0A1S3VCP31e-104A0A1S3VCP3_VIGRR; transcription factor bHLH18
STRINGXP_007134385.12e-64(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2332324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-21bHLH family protein