PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g05380.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 157aa    MW: 17445.2 Da    PI: 8.3295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g05380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1873121153
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a++++
  Vradi09g05380.1  73 PSYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAI 121
                      57*****998.**********843...6*********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1373121IPR001471AP2/ERF domain
CDDcd000184.76E-2673121No hitNo description
SuperFamilySSF541711.77E-1874124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-2774122IPR001471AP2/ERF domain
PROSITE profilePS5103219.98174133IPR001471AP2/ERF domain
SMARTSM003805.4E-2674128IPR001471AP2/ERF domain
PRINTSPR003679.8E-117586IPR001471AP2/ERF domain
PRINTSPR003679.8E-1197113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MENHAHFFNS FASTSTSTTS TTTNTTTTNT SISSTSSSSS TSNSSNSDST SQTLLENEKE  60
SKGCCKKRKL ENPSYRGVRM RNWGKWVSEI REPRKKSRIW LGTYPTAEMA ARAHDVAALA  120
IKDLFPDELC SYSSSWHLCA VGSGFRLEES LFWENY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g05380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-108AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516126.11e-53ethylene-responsive transcription factor ERF034-like
SwissprotQ391273e-29TINY_ARATH; Ethylene-responsive transcription factor TINY
SwissprotQ9LYD34e-29DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3VCP23e-52A0A1S3VCP2_VIGRR; ethylene-responsive transcription factor ERF034-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]