PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g04990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 225aa    MW: 25381.4 Da    PI: 7.8698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g04990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-183785254
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                     +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Vradi09g04990.1 37 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 85
                     69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-333696No hitNo description
SMARTSM003805.2E-4137100IPR001471AP2/ERF domain
PROSITE profilePS5103221.2063794IPR001471AP2/ERF domain
PfamPF008472.9E-113786IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-343794IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-213796IPR016177DNA-binding domain
PRINTSPR003674.0E-113849IPR001471AP2/ERF domain
PRINTSPR003674.0E-116076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALRGRRKAC DWFAQKIRGD ESGLNSGCEE KSRPQQRYRG VRQRHWGSWV SEIRHPLLKT  60
RIWLGTFETA EDAARAYDEA ARLMCGPNAR TNFPYNPNEP HSSSSKLLSA TLTAKLHKCH  120
MASLSLQMAK QKSPQNKEPQ PSEGSNPFAS ANVIIGSSAE TGFRWTENRH EELRWLQGNW  180
VSVAGQVEVS HQQFQPVLED DHIEQMIQEL LDYGSIELCS VCST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-153694160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-153698467ATERF1
3gcc_A1e-153698467ATERF1
5wx9_A5e-152098276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g04990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516221.11e-143ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW56e-72ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S3VCY71e-142A0A1S3VCY7_VIGRR; ethylene-responsive transcription factor ERF003-like
STRINGGLYMA07G02930.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]