PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g04410.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 671aa    MW: 74557 Da    PI: 4.5979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g04410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07558607147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      r+ WT+eE++++ d+v+  ++      W+ I r ++  +++ +++s+++++
  Vradi09g04410.1 558 RLMWTKEEEKKFEDVVRSNPPSlekyYWDYIFRAFP-DKSRAELVSYYFNV 607
                      678*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101116.28427120IPR001606ARID DNA-binding domain
SMARTSM010146.0E-1231116No hitNo description
SMARTSM005014.1E-1335121IPR001606ARID DNA-binding domain
SuperFamilySSF467741.96E-1538123IPR001606ARID DNA-binding domain
PfamPF013881.1E-853114IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.602.2E-1254126IPR001606ARID DNA-binding domain
SMARTSM011893.7E-6462512IPR000949ELM2 domain
CDDcd001670.00153561608No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MSMAGRLHLY DGVREENSGE IFGGSNDDSL CRFERLFAEF FSEICAFNCV LHYPPMLSDG  60
QDVDLYRLFL VVRGKGGYDA VCKGKLWDSV GEESGMGVSV GSSVELVYXR YLSALDSWMK  120
KVAESKVSPE FGVVDDRDKF GRRLMELQAE VEGLLSGCAD ERVVLVGEDV EGGLDEDDHN  180
SDGRELSGAN GVKSNGDEGG EHKQCDDSEM PDNDMDEAVL GNSDKGNDIM GGEEGFDGGK  240
MPEEQAVDIS DGANNNGTGV VSGGKKCDDS DDKGLVLDAS GGNSDGDSSG HKRKREGSVL  300
GSSSDDCDSP SRKRMRESAM DMLSWVTGVA KNPGDPEVGS IPEKSKWKSY TSQEGWKQVL  360
LFREATFYRR GSEQSNEQRN WQNQKMHPCL YEEQVGTNYN LRDRLKCDKK LLFGKSASLR  420
SSSDSSVATE NRTPNSHAEG QSELLDSPDA NAGLDKCATV RIPLGTNHQA EIPEWTGVTS  480
ESDSKWLGTR VWPQETVNTR LIERDPIGKG RQGSCGCPEE GSVECVRFHI SEKRAKVKLE  540
LGDAFYDWDF DRVGEEVRLM WTKEEEKKFE DVVRSNPPSL EKYYWDYIFR AFPDKSRAEL  600
VSYYFNVFML QRRGYQNRHT PDDIDSDDND EEAGPLRNVF GPLIQNSGHE MQSSRGSILL  660
TPKKTHKKRK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1661669PKKTHKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g04410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515094.10.0AT-rich interactive domain-containing protein 1 isoform X1
TrEMBLA0A1S3VAC20.0A0A1S3VAC2_VIGRR; AT-rich interactive domain-containing protein 1 isoform X1
STRINGXP_007135094.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724