PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g03680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 427aa    MW: 45660.5 Da    PI: 6.331
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g03680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.93.9e-22281343163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN +Lk+e+ +l++ ++++++e+
  Vradi09g03680.1 281 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITKLTEGSEQMRMEN 343
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-31198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.0E-25132260No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-16275340No hitNo description
PfamPF001707.8E-21281343IPR004827Basic-leucine zipper domain
SMARTSM003382.7E-21281345IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.082283346IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11284339No hitNo description
CDDcd147025.24E-20286334No hitNo description
PROSITE patternPS000360288303IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGNSEEGKSV KTGSPSSPAT TDQANQTYQP NIHVYPDWAA MQYYGPRVNV PPYFNSTVAS  60
GHAPHPFMWG PPQPMMPPYG PPYAAFYPPG GVYTHPAVAI GPHSHGQGVP SPPAAGTPSS  120
VDSPTKLSGN TDQGLMKKLK GFDGLAMSIG NCNAESAELG AENRLSQSVD TEGSSDGSDG  180
NTAGANQTKM KRSREETSTT DGEGKTETQD GPISKETASS KIVVPATPAS IAGKFVGPVI  240
SSGMTTALEL RNSLTVHSKE NLTSAPQPCA AVPPEAWIQN ERELKRERRK QSNRESARRS  300
RLRKQAETEE LARKVEMLTA ENVSLKSEIT KLTEGSEQMR MENSALREKL INTQLGQREE  360
IILESIDSKR STPVSTENLL SRVNNSSSND RSADNESDFC ENKPNSGAKL HQLLDTNPRA  420
DAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297303RRSRLRK
2297304RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g03680.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPVU418170.0U41817.1 Phaseolus vulgaris regulator of MAT2 (ROM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515363.10.0common plant regulatory factor 1-like isoform X2
SwissprotQ990891e-137CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A1S3VAI40.0A0A1S3VAI4_VIGRR; common plant regulatory factor 1-like isoform X2
STRINGXP_007135192.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-94G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]