PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g03130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CAMTA
Protein Properties Length: 1080aa    MW: 120418 Da    PI: 5.6418
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g03130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-173.23.8e-2329913488
             CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg........vevlycyYahs 88
                       sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK            evl+cy a  
  Vradi09g03130.1 29 YVSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKASMdflffslwWEVLMCYTATM 91
                     579***************************************999999999989998887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010762.3E-7191IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143728.2521150IPR005559CG-1 DNA-binding domain
PfamPF038593.0E-162971IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.0E-4491579IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.31E-16493579IPR014756Immunoglobulin E-set
PfamPF018331.2E-5493578IPR002909IPT domain
SuperFamilySSF484034.2E-16677786IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-16683787IPR020683Ankyrin repeat-containing domain
CDDcd002041.70E-12692781No hitNo description
SMARTSM002482800693722IPR002110Ankyrin repeat
PROSITE profilePS5029717.9693801IPR020683Ankyrin repeat-containing domain
PfamPF127963.2E-6698786IPR020683Ankyrin repeat-containing domain
SMARTSM002480.027726755IPR002110Ankyrin repeat
PROSITE profilePS500889.698726758IPR002110Ankyrin repeat
SMARTSM000150.29901923IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.114902931IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.19E-7903952IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0022904922IPR000048IQ motif, EF-hand binding site
SMARTSM000150.017924946IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.413925949IPR000048IQ motif, EF-hand binding site
PfamPF006124.8E-4927946IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1080 aa     Download sequence    Send to blast
MFHITSEPPN RPPSMVSAYV TDQFITASYV SGSLFLFDRK VLRYFRKDGH NWRKKKDGKT  60
VKEAHEKLKA SMDFLFFSLW WEVLMCYTAT MPMEKKMKIF RGEAIGCLNS ECDELVYILL  120
GLYSRLDGGK QYLGTTVQVN KTNVGGKTYS GEATSDSQKG SSLSSGFPRN YGSVPSGSTD  180
SMSPTSTLTS LCEDADSEDI HQASSGSQSY HEAKCLGNDC PIDKIDARSN SSYLMHPSSG  240
DHGQFPVPGS EYIPLIQGHR AHDIASWDNA MEQSSGKDTA PSLVSSTSIP PSTSGNILEE  300
NNAVPGNLLG RKNVLIEEER VSQALHSNWQ IPFGDDTGEL PKWSLTQSLG LEFGSDYGTS  360
LLGDVTDNAG SEILAEMFTF NGELKEKSVH QNISKQYTNT PSQPATKSNS DYEVAGEASI  420
NYTLTMKRGL LDGEESLKKV DSFSRWITKE FAGVDDLHTQ SSPGISWNTD DCGDVIDDTS  480
LNLSLSQDQL FSINDFSPKW AYAESEIEVL IVGTFLKSQP MVTACNWSCM FGEVEVPAEV  540
LANGILCCQA PPHKIGRVPF YVTCSNRFAC SEVREFEYRE GFDRNIDFTE FFTSSTEMVL  600
HLRLVGLLSL SSVHTSNQVL EDDMEKRNLI FKLISLKEEE EYSSREETTV EMDATKHKLK  660
EHMFHKQVKE MLYSWLLHKV TETGKGPLVL SEEGQGVLHL VAALGYDWAI KPIITAGVNI  720
NFRDVSGWTA LHWAAYCGRE RTVAVLVSMG AATAAVTDPC PEFPEGRTAS DLASSNGHKG  780
ISGFLAESLL TSHLELLTME ESKDGRKEIS GMKAVQTVSE RTATPVLYGD IPDVICLKDS  840
LNAVRNATQA ADRIHQVYRM QSFQRKQLAK HDHDDEFGLS DQQALSLLAS RMSKSGQGEG  900
LASAAAIQIQ KKFRGWKKRK EFLIIRQRIV KIQAHVRGHQ VRKQYRTIIW SVGILEKVIL  960
RWRRKGSGLR GFRSDTVNKV IPEQPIESPK EDDYDFLKEG RKQSEARFQK ALSRVKSMVQ  1020
YPEARAQYRR VLNVVEDFRQ TKGDNLNSMN SEEAVDGVED LIDIDMLLDD ENFLPIAFD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g03130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516371.10.0calmodulin-binding transcription activator 2
TrEMBLA0A1S3VDD90.0A0A1S3VDD9_VIGRR; calmodulin-binding transcription activator 2
STRINGXP_007159108.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains