PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g02700.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 458aa    MW: 52483 Da    PI: 8.5888
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g02700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.44e-06430450526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+++ r G C +Gd+CkF+H+
  Vradi09g02700.1 430 VCKHYPR-GRCYFGDNCKFIHD 450
                      5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689065.68E-883128No hitNo description
Gene3DG3DSA:1.10.720.301.6E-984128IPR003034SAP domain
SMARTSM005136.1E-493127IPR003034SAP domain
PfamPF020378.8E-1093127IPR003034SAP domain
PROSITE profilePS5080010.30693127IPR003034SAP domain
PROSITE profilePS5010314.849425452IPR000571Zinc finger, CCCH-type
SMARTSM003560.0063426451IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7427450IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6429452IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MANKDSPMEL YEISTESEGS DSDSDWEDSG EDSDYESLEE SHSKFSNLSL KHKAKARFIE  60
EKDRGEEELV VTASVNDGEN FGKVQKLIEE GLLEKLKVDE CKLYLRKNGL RLTGNKDTLI  120
ERIREHLEIL NGGEKKYPPS SFVLNCKGDA CTGDVVLFEQ NVYEMFNIAS RSASGQPCGK  180
RIVAGRIVKE SYGAAKQQHT FTIEVLWSKG EKPLPPLYPL LIKGRNLYRL KTLRQKWEDE  240
AERKKILMEK HSRGSLARAY REERIQEKEK RKNIKENRIS KIEARNQRQS NSHITRPQYQ  300
PQGTNVVINP ENPEFPSRNS DLSVNIMKER YCILNNPAAT FGGTSFGVQS MHRNHTSDFR  360
NTFDIGRVRG AETGANYYAD PHFRENLPRF VNCHPNMAEM GTHHRIPLAN ANHSHPFMVP  420
NRESFKINQV CKHYPRGRCY FGDNCKFIHD LRDKGNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g02700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516081.10.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N28e-76C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A1S3VCJ70.0A0A1S3VCJ7_VIGRR; zinc finger CCCH domain-containing protein 62
STRINGGLYMA16G01296.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]