PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g02480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 325aa MW: 36961.7 Da PI: 8.1282 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.2 | 3.8e-25 | 63 | 107 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e Vradi09g02480.1 63 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 107 79****************************************985 PP | |||||||
2 | QLQ | 54.7 | 3.1e-19 | 12 | 47 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+FT++Q+q+L++Q+l++Ky++ + P+Pp+L+ i+ Vradi09g02480.1 12 SPFTPSQWQELEQQALVFKYMVTGTPIPPDLIYSIK 47 89*****************************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.1E-11 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.4E-14 | 13 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.217 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.325 | 63 | 107 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.9E-21 | 64 | 106 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MMSATATARN RSPFTPSQWQ ELEQQALVFK YMVTGTPIPP DLIYSIKRIG WGCFEMGFGR 60 KVDPEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGRNR SRKPVEVSSA TSTATNTSQT 120 IPSYTRNLSL ANPTITSPSF PFSPLPSSMP CDSQPFSHSY QNPSLNPFFY AQSTSSRPPD 180 SDFSPQDATT HQLFMDSASY SHDEKDYRHV HGIREDVDER AFFPEASGSA RNYSDSYQPL 240 SMSSYKSYSN SSFQNINDAT NQRQQEQQHC FVLGTDFKST RPSKEKEAET TSQRPLHRFF 300 GEWPPKNTDS WLDLASNSRI PTDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g02480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017405895.1 | 0.0 | PREDICTED: growth-regulating factor 5-like isoform X3 | ||||
TrEMBL | A0A0S3SZU0 | 0.0 | A0A0S3SZU0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135443.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-51 | growth-regulating factor 5 |