PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g02290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 352aa    MW: 38408 Da    PI: 9.6398
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g02290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.24.7e-32183239158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep++VNaKQy++Il+RRq Rakl++++kl +k+rkpylheSRh hAl+R+RgsgGrF
  Vradi09g02290.1 183 EEPIFVNAKQYHAILRRRQYRAKLDAQNKL-IKERKPYLHESRHLHALKRARGSGGRF 239
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.1E-37181242IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.323182242IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26184239IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.8E-23185207IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.8E-23216239IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MKNLNEKASG STHLTAPYAL GCSSWGASSE SDVQQSSMSR GLTLKMGVLP QQCHKTKPLN  60
FQYQDRDSSS SQSTGQSYPE VGSAQSGQFS VQCSNSSACS TLNTTGRKSI EGVIRSSVRG  120
QDFTFPPSQM CQNQPHAHTA FHLAEPCFSG LLASPYGPQP NIHPAQLIGM ATARIPLPLD  180
LSEEPIFVNA KQYHAILRRR QYRAKLDAQN KLIKERKPYL HESRHLHALK RARGSGGRFL  240
NTKKHEESKP TSHNHDIDVS RCTNLNLRGN MSESKARLME KLNYRDGAST ATCSDISSAS  300
NSGDLFQQHQ PDIRLCVYPS HIGRNMQGYS PDINGGGGGG GANQHRLSVL M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21183244263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g02290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516040.10.0nuclear transcription factor Y subunit A-3
RefseqXP_014516041.10.0nuclear transcription factor Y subunit A-3
TrEMBLA0A1S3VCV70.0A0A1S3VCV7_VIGRR; nuclear transcription factor Y subunit A-3
STRINGXP_007135485.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.18e-58nuclear factor Y, subunit A3