PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g01520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HB-other | ||||||||
Protein Properties | Length: 248aa MW: 28006.6 Da PI: 4.9108 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.9 | 2.5e-06 | 15 | 71 | 8 | 52 |
-HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrR 52 ++++ eLe+ ++ ++ ++ + +e+A++ +L+ +qV WF+Nr Vradi09g01520.1 15 SSDEMLELERIYKDmgEKPLDWKLCQEIARRFsslsngagktSLSGQQVEQWFKNRQ 71 778899*******6669999***********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-4 | 15 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 4.6E-20 | 101 | 181 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDTSTLTEQP FLKLSSDEML ELERIYKDMG EKPLDWKLCQ EIARRFSSLS NGAGKTSLSG 60 QQVEQWFKNR QRASQNKDSS SPNLVSLSAG LSSSKATDIS DLAFEARSTK DIAWHDVALF 120 LNYRVMCSGE LEVRVRYAGF SKEQDEWVNV KQGVRVRSIP LAPSECQKLQ DGNLILCFLR 180 RVHDPTECTC TFIIQYLHDQ TEEEVSWNRL CIRPTEEESA VHPILAIDPT QSPSPSFSLN 240 PIESLWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iup_A | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iup_B | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_A | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 6e-40 | 100 | 216 | 2 | 135 | SHH1 SAWADEE |
4iur_B | 6e-40 | 100 | 216 | 2 | 135 | SHH1 SAWADEE |
4iut_A | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 6e-40 | 100 | 216 | 2 | 135 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g01520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 5e-69 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515923.1 | 1e-180 | protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1 | ||||
Refseq | XP_014515924.1 | 1e-180 | protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1 | ||||
Refseq | XP_022642119.1 | 1e-180 | protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1 | ||||
TrEMBL | A0A1S3VCS0 | 1e-179 | A0A1S3VCS0_VIGRR; protein SAWADEE HOMEODOMAIN HOMOLOG 1 isoform X1 | ||||
STRING | XP_007135638.1 | 1e-138 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2704 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 2e-36 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |