PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g01470.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91918.8 Da    PI: 6.2403
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g01470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-1853111357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Vradi09g01470.1  53 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 111
                      5679*****************************************************97 PP
2START180.21.2e-561974052205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l
  Vradi09g01470.1 197 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTAngGTIEL 289
                      7899******************************************************.8888888888****************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++l+p Rdf+ +Ry+  l +g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+
  Vradi09g01470.1 290 LYMQLYAPTTLAPaRDFWLLRYTSVLDDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRP 383
                      ********************************************9988899******************************************* PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s+++ ++kt++a+l+++++
  Vradi09g01470.1 384 LYESSTVLAQKTTMAALRHLRQ 405
                      *****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3748112IPR001356Homeobox domain
SMARTSM003891.1E-1550116IPR001356Homeobox domain
SuperFamilySSF466891.28E-1652114IPR009057Homeodomain-like
CDDcd000861.31E-1653113No hitNo description
PfamPF000465.8E-1654111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-1855111IPR009057Homeodomain-like
CDDcd146862.91E-6105144No hitNo description
PROSITE profilePS5084825.118187401IPR002913START domain
CDDcd088752.56E-80191406No hitNo description
SMARTSM002343.0E-43196406IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-23196402IPR023393START-like domain
SuperFamilySSF559616.04E-39196406No hitNo description
PfamPF018523.7E-54197405IPR002913START domain
PfamPF086701.8E-26741836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MKVVSKAKDL IPIRVSRWTE IGEAALDGAG CEIGEIDRAG FEDGSKNGID NGKYVRYTPE  60
QVEALERLYH DCPKPSSIRR QQLIRECPIL SNIEPKQIKV WFQNRRCREK QRKESSRLQA  120
VNRKLTAMNK LLMEENDRLQ KQVSQLVYEN GYFRQHTQNT TQATKDTSCE SAVTSGQHSL  180
TTQQPPRDAS PAGLLSIAEE TLAEFLSKAT GTAVEWVQMP GMKPGPDSIG IVAISHGCSG  240
VAARACGLVG LEPTRVAEIL KDRPLWFRDC RAVDVLNVLP TANGGTIELL YMQLYAPTTL  300
APARDFWLLR YTSVLDDGSL VICERSLKNT QNGPSMPPVQ HFVRAEMLPS GYLIRPCEGG  360
GSIIHIVDHM DLEPWSVPEV LRPLYESSTV LAQKTTMAAL RHLRQISHEV SQSNVTGWGR  420
RPAALRALSQ RLSRGFNEAL NGFTDEGWTT IGNDGVDDVT ILVNSSPDKL MGLNLPFANG  480
FPSVSNAVLC AKASMLLQTV ATCNFSSQNV PPAILLRFLR EHRSEWADNN MDAYTAAAIK  540
VGPCSLSGSR VGNYGGQVIL PLAHTIEHEE FLEVIKLEGV VHSPEDAIMP REMFLLQLCS  600
GMDENAVGTC AELISAPIDA SFADDAPLLP SGFRIIPLES GKEASSPNRT LDLASALDIG  660
PSGNRASNEC AGNSGCMRSV MTIAFEFAFE SHMQEHVASM ARQYVRSIIS SVQRVALALS  720
PSHLSSHTGL RSPLGTPEAQ TLAHWICNSY RCYLGVELLK SNNEGNESLL KSLWHHSDAI  780
LCCTLKALPV FTFSNQAGLD MLETTLVALQ DISLEKIFDD HGRKILFSEF PQIIQQV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g01470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516466.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_022641727.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1S3VDN00.0A0A1S3VDN0_VIGRR; homeobox-leucine zipper protein ATHB-15
STRINGXP_007135643.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]