PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 28763 Da PI: 8.0245 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vradi09g00170.1 102 FSCNYCQRKFYSSQALGGHQNAH 124 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.51E-6 | 99 | 129 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDLQRQEPCP SECLNIITFS DTMPCQRSSI DTQRKRNHTE SDDQKHPNDS NPGVLLDLSL 60 SNKDSGDDES KPELNLLNCF HTNFSENSSE SSQGNELDPR VFSCNYCQRK FYSSQALGGH 120 QNAHKRERTL ARRGYKAGAA DFGHTYSTMP FLPSHGLYNK SLGIQVHSMI NKPSYQAPIF 180 GLCRSNGWQR QPLDSQPAIG NFRVGAESES SLADSVPKVG KFSTRVVTEG FGGHCFGSFS 240 HLKSKQEKLQ KLDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515964.1 | 0.0 | zinc finger protein 3 | ||||
TrEMBL | A0A1S3VCV9 | 0.0 | A0A1S3VCV9_VIGRR; zinc finger protein 3 | ||||
STRING | XP_007135804.1 | 1e-167 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 6e-42 | C2H2 family protein |