PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g23210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | RAV | ||||||||
Protein Properties | Length: 284aa MW: 32413.5 Da PI: 8.1196 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.8 | 3.2e-09 | 14 | 60 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV ++g W A+I+ + +r++lg+f ++ eAa a++ a kl+ Vradi08g23210.1 14 KFKGVV-PQQNGNWGAQIYA------NhQRIWLGTFKSEREAAMAYDSASIKLR 60 789996.666999****999......44**********99*********99997 PP | |||||||
2 | B3 | 82.7 | 3.5e-26 | 136 | 230 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++rlv+pkk+a ++ +++ +++++ ++d+ r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F Vradi08g23210.1 136 FQKELTPSDVGKLNRLVIPKKHAVTYfpnvsdggaeshEENVSGDVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAF 229 99******************************9988775555699**********************************************998 PP E CS B3 83 k 83 Vradi08g23210.1 230 F 230 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-21 | 13 | 71 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-16 | 14 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.805 | 14 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-18 | 14 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-14 | 14 | 71 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-30 | 133 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-26 | 134 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-23 | 135 | 231 | No hit | No description |
PROSITE profile | PS50863 | 11.124 | 136 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-23 | 136 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-18 | 136 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MQEENNAAGQ LLQKFKGVVP QQNGNWGAQI YANHQRIWLG TFKSEREAAM AYDSASIKLR 60 SGDSHRNFPW NDQTVQEHQF QSHYSTETML SMIRDGTYPS RFATFLSTRQ TQQGGVPKHV 120 TLKGDCKEQL CCTQLFQKEL TPSDVGKLNR LVIPKKHAVT YFPNVSDGGA ESHEENVSGD 180 VEVAFYDRLM RLWKFRYCYW KSSQSYVFTR GWNRFVKDKK LKAKDTIAFF MCEPVDCRKG 240 GEGEAFGLID VIYNSDDEDT KDENTVKDLN AEKGLKLFGV LIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-27 | 135 | 229 | 13 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g23210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512024.2 | 0.0 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C6P5 | 8e-98 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A1S3V1K2 | 0.0 | A0A1S3V1K2_VIGRR; AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
STRING | XP_007142618.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 1e-100 | RAV family protein |