PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g23140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 445aa MW: 49199 Da PI: 5.9607 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.4 | 8.7e-10 | 158 | 199 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Vradi08g23140.1 158 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 199 6889*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-8 | 149 | 202 | No hit | No description |
SMART | SM00338 | 8.6E-8 | 155 | 218 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 157 | 201 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.4E-7 | 159 | 199 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-7 | 159 | 202 | No hit | No description |
CDD | cd14708 | 1.94E-21 | 159 | 211 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 162 | 177 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.3E-32 | 241 | 316 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MPSFNPQLPN SNACYTEGSA VDSFRLSDFD QSVGYRIEDA VALSGNSILD SLKVSSQTIS 60 RGVIQLGSFD KLPTSLDKSI LTNQTEQQSL QFQKVQTSTL VTVDTEHQEE FAMADASPRT 120 DISTDADTDD KNPQFDRSQA LAAVASDSSD RSKDKTDQKT LRRLAQNREA ARKSRLRKKA 180 YVQQLESSRL KLTQLEQELQ RARQQGVFIS SSGDQAHSMS GNGAMAFDAE YARWLEEQNR 240 QINELRAAVN SHAGDTELCM IIDGVMAHYD EIFRLKANAA KADVFHLLSG MWKTPAERCF 300 LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS 360 TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL RQQTLQQIHR ILTTRQSARA 420 LLAIHDYFSR LRALSSLWLA RPRD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g23140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093315 | 0.0 | BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514186.1 | 0.0 | transcription factor TGA6 | ||||
Refseq | XP_014514187.1 | 0.0 | transcription factor TGA6 | ||||
Swissprot | Q6IVC2 | 0.0 | TGAL1_ORYSJ; Transcription factor TGAL1 | ||||
TrEMBL | A0A1S3V764 | 0.0 | A0A1S3V764_VIGRR; transcription factor TGA6 | ||||
STRING | XP_007142625.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-151 | TGACG motif-binding factor 6 |
Publications ? help Back to Top | |||
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