PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g23030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 323aa    MW: 36010 Da    PI: 10.237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g23030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05211234123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+Cp+Cg +F ++  +  H ++ H
  Vradi08g23030.1 211 YTCPKCGCVFETSQRFAAHVSSmH 234
                      9******************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.162211239IPR007087Zinc finger, C2H2
PROSITE patternPS000280213234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090057Biological Processroot radial pattern formation
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAMNSSKSND FSTILFPLSA SNAVQKSEAL TVKGMSQLGL SQRVKSLRKM SLATKRRAVM  60
FHGKGKEVLR AQFSDLSPTS VGVDGGDTES ILRASQIVRE KLEKAVCNTR TNKKAKEMLQ  120
AKLLLAFASE SDVAVGETSS TPQRGSFLNH FAYPFPNRFW QADTEVDKSI SLCATPLRVC  180
FPDESVYGSR DNESEYDGRM HSNPYKKNGP YTCPKCGCVF ETSQRFAAHV SSMHYRYETK  240
SERKKRMMAK IRRRSLRLEW ENGDDGQRRN SSVFGFAGNN SNVAPAQVKI ETESVVRLQL  300
APPPGWPKIT EAVRIKSEPL YN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g23030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-170AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512023.20.0uncharacterized protein LOC106770744
TrEMBLA0A1S3V1080.0A0A1S3V108_VIGRR; uncharacterized protein LOC106770744
STRINGXP_007142642.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1674277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.12e-18C2H2-like zinc finger protein