PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g21830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 344aa    MW: 37239.7 Da    PI: 9.3284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g21830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-052345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Vradi08g21830.1 23 FICEVCNKGFQREQNLQLHRRGH 45
                     89*******************88 PP

2zf-C2H212.80.0003799121123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Vradi08g21830.1  99 WKCDKCSKKYAVQSDWKAHSKTC 121
                      58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-62245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.73E-82245No hitNo description
PROSITE profilePS5015710.992345IPR007087Zinc finger, C2H2
PfamPF121711.5E-52345IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00522345IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SMARTSM003551306494IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-587120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.73E-894119No hitNo description
SMARTSM0035515099119IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MATDPDAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK  60
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT  120
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARQPPN LGAAIGTHLF GTTANTIPLN  180
LSQVTSHISN IQDPNTQPTE LLRLGGAAAR ASQFDHLLAA QMGASSSNST ASLLKSFGSA  240
SSSSGSKSEQ HRPLVNAASY GGGIFGGNVN EQGNSNLQDL MNSFAVGGNS SIFEGGFEAY  300
DHNSNNNNRE GKVHAMSGSS SIGGSDRLTR DFLGVGVAFS CVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3595156364Zinc finger protein JACKDAW
5b3h_F1e-3595156364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g21830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514311.11e-160protein indeterminate-domain 5, chloroplastic
RefseqXP_014514312.11e-160protein indeterminate-domain 5, chloroplastic
RefseqXP_022641501.11e-160protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1S3V7J11e-159A0A1S3V7J1_VIGRR; protein indeterminate-domain 5, chloroplastic
STRINGXP_007142834.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-98indeterminate(ID)-domain 5