PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g21830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 344aa MW: 37239.7 Da PI: 9.3284 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 23 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Vradi08g21830.1 23 FICEVCNKGFQREQNLQLHRRGH 45 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00037 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Vradi08g21830.1 99 WKCDKCSKKYAVQSDWKAHSKTC 121 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-6 | 22 | 45 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.73E-8 | 22 | 45 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 1.5E-5 | 23 | 45 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 64 | 94 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.7E-5 | 87 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.73E-8 | 94 | 119 | No hit | No description |
SMART | SM00355 | 150 | 99 | 119 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MATDPDAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK 60 RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT 120 CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARQPPN LGAAIGTHLF GTTANTIPLN 180 LSQVTSHISN IQDPNTQPTE LLRLGGAAAR ASQFDHLLAA QMGASSSNST ASLLKSFGSA 240 SSSSGSKSEQ HRPLVNAASY GGGIFGGNVN EQGNSNLQDL MNSFAVGGNS SIFEGGFEAY 300 DHNSNNNNRE GKVHAMSGSS SIGGSDRLTR DFLGVGVAFS CVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-35 | 95 | 156 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-35 | 95 | 156 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g21830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014514311.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_014514312.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_022641501.1 | 1e-160 | protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A1S3V7J1 | 1e-159 | A0A1S3V7J1_VIGRR; protein indeterminate-domain 5, chloroplastic | ||||
STRING | XP_007142834.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-98 | indeterminate(ID)-domain 5 |