PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g21710.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 175aa    MW: 20147.4 Da    PI: 10.0636
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g21710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.4e-121081712796
                      ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +g+    k+++  + ++r+W vkli ++ +   v+++GW +F+k+ ++++gD++vF++++     l+v+v
  Vradi08g21710.1 108 SGQ----KDVM-LQMENREWWVKLICCREKYD-VFSSGWPKFAKESNMEVGDVCVFEFIDPAIPLLRVHV 171
                      222....3444.44467*******88777766.7999********************9875444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.65E-1376173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1276173IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-881173No hitNo description
SMARTSM010190.003583174IPR003340B3 DNA binding domain
PROSITE profilePS5086310.53283174IPR003340B3 DNA binding domain
PfamPF023621.0E-9100172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MPSMVSSQPC GKTQNVERDA NVQQQQVYAD KGGPSHQWTN VQKITKQQPN WVRSTQSGKC  60
LNKPRSLKAQ KISKKFKSKY PYFTLLIVQA KLEENAMKHV PKFLNCMSGQ KDVMLQMENR  120
EWWVKLICCR EKYDVFSSGW PKFAKESNME VGDVCVFEFI DPAIPLLRVH VFKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g21710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-99AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512001.21e-127B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S3V0X91e-125A0A1S3V0X9_VIGRR; B3 domain-containing transcription factor VRN1-like
STRINGXP_007142861.11e-42(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-09related to vernalization1 1