PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g21650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 27351.5 Da PI: 6.6092 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.3e-14 | 124 | 168 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Vradi08g21650.1 124 PWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 168 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.388 | 12 | 66 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.51E-10 | 14 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-4 | 16 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 16 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-5 | 19 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.673 | 117 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.74E-17 | 118 | 173 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-17 | 120 | 172 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-11 | 121 | 171 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 121 | 167 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-12 | 124 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-9 | 124 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MFHESSVTRW QPQPVQPTEW TRYHDKLFER ALLLVPEDLP DRWNQIAVHV PGKTPAEVRE 60 HYDALVHDVF EIDSGRVEVP SYVDDLAPPQ LSGGAGNSAW DSANQISFGS KPKQGETERK 120 KGTPWTEEEH RLFLIGLSKF GKGDWRSISR NVVVTRTPTQ VASHAQKYFL RQNSGKKERK 180 RSSIHDITTV DSNSLPVPID QNWVPPPGTS MQQSQDMLSY ASTSMHDQMG PFGYSNYGFE 240 M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 20 | 82 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g21650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512566.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 5e-62 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3V2I8 | 1e-179 | A0A1S3V2I8_VIGRR; transcription factor DIVARICATA | ||||
STRING | XP_007142868.1 | 1e-167 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-80 | MYB family protein |
Publications ? help Back to Top | |||
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