PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g21520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 463aa    MW: 51367.4 Da    PI: 6.2421
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g21520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.7e-10174213440
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                       k  rr+++NReAAr+sR+RKka++++Le+   + ++Le+
  Vradi08g21520.1 174 QKTVRRLAQNREAARKSRLRKKAYVQQLENsrvRLAQLEQ 213
                      67889************************83334444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-8164220No hitNo description
SMARTSM003382.9E-8171242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.335173217IPR004827Basic-leucine zipper domain
PfamPF001703.4E-7175214IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-6175218No hitNo description
PROSITE patternPS000360178193IPR004827Basic-leucine zipper domain
PfamPF141445.5E-30260334IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MQSFNPTESE STSPLYSHSS FIHRGNDANP NPTRFSDLQH SFRLHDAVDL SSNSVFGAKS  60
NNMAVVASNL QCGAFNTNLG GAEFASTVVG CVETESQHMY QRGNSSATMP MGNQYVEKWA  120
DDSQHTEDTC TDIDTDDKNQ CFSTVSWGNG VGDGALVVVD SQDQSKTKVK PEDQKTVRRL  180
AQNREAARKS RLRKKAYVQQ LENSRVRLAQ LEQELQRARQ QGVLIANGIT ADRGHSVVGN  240
GALAFDMDYA RWVDEHQRLI NDLRSATNSR MGDNELHVLV DGVMAHYDEL FRLKSIGAKA  300
DVFHILSGMW KTPAERCFIW LGGFRSSELL KIVRNQLEPL TEEQLMGIYN LQQSSQQAED  360
ALSQGMEALQ QSLSDTLSSS SQGSSASGNV AEYMGQMAIA LGKLATLESF LHQADLLRQQ  420
TLQQMRRILT TFQAARALLV INDYVSRLRA LNSLWLACPR EY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g21520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-129AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513062.10.0transcription factor TGA2.3
SwissprotQ415581e-159HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1S3V4F50.0A0A1S3V4F5_VIGRR; transcription factor TGA2.3
STRINGXP_007142889.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-131bZIP family protein