PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g21390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 350aa    MW: 38724.7 Da    PI: 4.5795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g21390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-17118166254
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      +y+GVr++k +g+W+AeIrd +     + +r++lg+f taeeA +a++  r+++e
  Vradi08g21390.1 118 KYRGVRQRK-WGKWAAEIRDpF-----QsTRIWLGTFNTAEEASQAYETRRLEFE 166
                      8*******9.**********55.....45******************98888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.48E-23118158No hitNo description
Gene3DG3DSA:3.30.730.106.5E-22118167IPR001471AP2/ERF domain
SMARTSM003807.6E-18118182IPR001471AP2/ERF domain
PfamPF008474.5E-11118166IPR001471AP2/ERF domain
PROSITE profilePS5103220.073118176IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-16118165IPR016177DNA-binding domain
PRINTSPR003678.8E-11119130IPR001471AP2/ERF domain
PRINTSPR003678.8E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MTESRKQMTP KLRQKPHHSL QECKATRKLR IIYNDPDATD SSDDESGVFH NTKKAKRNFC  60
EIPLPPLPQT FTTPETNSFE VNSNSNAVRV KVCIEGQPQT KKRVLSKIPS SRRSTSGKYR  120
GVRQRKWGKW AAEIRDPFQS TRIWLGTFNT AEEASQAYET RRLEFEAKAR AYKNVSEPLS  180
TTSDKSICCN SSDAAAVSVS EKFSTTSDDS DGVLSHPSPS SVLELDSSSS KPIDNDNVLS  240
EEAVETNNLV SEFAELEIPD LSLLNLPSPF NSATAALASG TEPDFGLDFD WLSLEDHGQG  300
FDDFGGLEDI RICGFDNNEP SKLPDFDFGD FCAEEFAGWT EEPLNIPCA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g21390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510959.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A1S3UYI60.0A0A1S3UYI6_VIGRR; ethylene-responsive transcription factor ERF118
STRINGXP_007142907.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.28e-36ERF family protein