PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g21370.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 292aa    MW: 32454.2 Da    PI: 8.6609
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g21370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.6e-091659340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ +  k+++++C  ++ +lC+ C ++ H+       H++v
  Vradi08g21370.1 16 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
                     578*****************************667888888876 PP
2CCT68.81.4e-23236279144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Vradi08g21370.1 236 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 279
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9071461IPR000315B-box-type zinc finger
SMARTSM003362.9E-101461IPR000315B-box-type zinc finger
PfamPF006433.5E-81659IPR000315B-box-type zinc finger
CDDcd000211.42E-91761No hitNo description
PROSITE profilePS5101716.083236278IPR010402CCT domain
PfamPF062034.1E-18236278IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSTAKNAANA VGAKTARACD SCITKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASYKSTD EQQQQPPTWP TKKARTPRHG KHSRSNNPFH LVPEVGSEEV NSHDENEEQL  120
LYRVPIFEPF VAELCGNNSS SPSSVTSTDQ GVAAAVAEAE NKGVESNVFY HGNNEMENLH  180
GMLPSDAELA EFAADVENLL GRGLENECES YGRGIHDPYG EVGGFGIHPV IIDGGREARV  240
SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRAS FPPSTFPLLN H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246262RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g21370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512653.11e-135zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD02e-55COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S3V2T31e-134A0A1S3V2T3_VIGRR; zinc finger protein CONSTANS-LIKE 16
STRINGGLYMA10G42090.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-54B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]