PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g20270.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HB-other

Protein Properties

Length: 918aa MW: 103031 Da PI: 6.1354

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g20270.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.9	1.4e-12	531	575	12	56
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++L F++n+yp+++++e LA++lgLt +qV WF N R + Vradi08g20270.1 531 VQRLHISFKENQYPDRATKENLAQELGLTYQQVGKWFDNTRWSFR 575 6889999**********************************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.8E-12	518	581	IPR001356	Homeobox domain
CDD	cd00086	8.58E-12	524	578	No hit	No description
SuperFamily	SSF46689	3.89E-12	525	580	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.957	531	577	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-13	531	581	IPR009057	Homeodomain-like
Pfam	PF00046	4.2E-10	531	575	IPR001356	Homeobox domain
Pfam	PF04176	3.8E-54	686	881	IPR007303	TIP41-like protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MKQLFKIPKW SCRQCRCRLS TMEDADAVKE ELLDSHLDYS GGCCGVWFFL RPMTSPFGEL 60 TSNNSAAGRM STEQSELSEK TQLGTEQLLK EQRESGTVLT SSVIDEISNQ VFANATENSV 120 ILLPAPPQHD SEKNCQNVEG SHLQQSTDKE VSLQLSNDKP ENPSQPLSEN EPVESVSASA 180 GDGQKQSSPA QANTSYVNKL LDPPNEDAVT NFSEKVSNSP ANSQSRRKGK KNSKLLKKTY 240 MLRSIGSSDR ALRSKTKENP KTPEPSRVCL LLFSSKSEYD FMEKLKPEKE LQRAKSEILR 300 RKLNIRNLFR DLDSLCAEGK LPESLFDSEG EIDSEDVVPP DDEGWLCPGC DCKDDCMDLI 360 NDSFGTSLSI SDTWEDEEIR SASLDDVKHL RSYGKKKGKA GKKLSMADEL SSLLEPDSGG 420 EGSIHVSGKR NLERLDYKKL YDETYHSDTS EDEDWTATVT PSRKKKGNAT PVSPNGNASN 480 NSMHTPKRNG HQNKFENTKN SPAKSHGDVK FDSREQTSRS PGGHRLGEAV VQRLHISFKE 540 NQYPDRATKE NLAQELGLTY QQVGKWFDNT RWSFRHSSKT NSGRNTLRKA ADSRAENEGG 600 ECELVSPELG SRWICFHSGS ELKPTMDLEV DENDLKAAGA ELFADDGRRG IHISGWSIET 660 RRHSILNSST IQEWEQKLNT SHLPEMVFGE NTLILRHLSS GTRIHFNAFD ALCGWKQEAL 720 PPVEVPAAAK WKFRSKPSQQ VILDYDYTFT TPYCGSGNIE INKDVVRILS LFFYRLICLP 780 ECHFSYMSHE YNSALASKEP ILFYDEVVLY EDELADNGVS LLTVKVRVMP SSWFLLLRFW 840 LRVDGVLIRL RETRMHCVFG GNTSPIVLRE SCWRESTFQA LSAQEHPFDS GAYGDPSFIS 900 QKLPIIMHTT KKLVISS*

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MKQLFKIPKW SCRQCRCRLS TMEDADAVKE ELLDSHLDYS GGCCGVWFFL RPMTSPFGEL  60
TSNNSAAGRM STEQSELSEK TQLGTEQLLK EQRESGTVLT SSVIDEISNQ VFANATENSV  120
ILLPAPPQHD SEKNCQNVEG SHLQQSTDKE VSLQLSNDKP ENPSQPLSEN EPVESVSASA  180
GDGQKQSSPA QANTSYVNKL LDPPNEDAVT NFSEKVSNSP ANSQSRRKGK KNSKLLKKTY  240
MLRSIGSSDR ALRSKTKENP KTPEPSRVCL LLFSSKSEYD FMEKLKPEKE LQRAKSEILR  300
RKLNIRNLFR DLDSLCAEGK LPESLFDSEG EIDSEDVVPP DDEGWLCPGC DCKDDCMDLI  360
NDSFGTSLSI SDTWEDEEIR SASLDDVKHL RSYGKKKGKA GKKLSMADEL SSLLEPDSGG  420
EGSIHVSGKR NLERLDYKKL YDETYHSDTS EDEDWTATVT PSRKKKGNAT PVSPNGNASN  480
NSMHTPKRNG HQNKFENTKN SPAKSHGDVK FDSREQTSRS PGGHRLGEAV VQRLHISFKE  540
NQYPDRATKE NLAQELGLTY QQVGKWFDNT RWSFRHSSKT NSGRNTLRKA ADSRAENEGG  600
ECELVSPELG SRWICFHSGS ELKPTMDLEV DENDLKAAGA ELFADDGRRG IHISGWSIET  660
RRHSILNSST IQEWEQKLNT SHLPEMVFGE NTLILRHLSS GTRIHFNAFD ALCGWKQEAL  720
PPVEVPAAAK WKFRSKPSQQ VILDYDYTFT TPYCGSGNIE INKDVVRILS LFFYRLICLP  780
ECHFSYMSHE YNSALASKEP ILFYDEVVLY EDELADNGVS LLTVKVRVMP SSWFLLLRFW  840
LRVDGVLIRL RETRMHCVFG GNTSPIVLRE SCWRESTFQA LSAQEHPFDS GAYGDPSFIS  900
QKLPIIMHTT KKLVISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d9g_A	2e-28	656	915	8	244	TIP41-like protein
5d9g_B	2e-28	656	915	8	244	TIP41-like protein

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	237	KKNSKLLKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g20270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014514172.2	0.0	homeobox protein HAT3.1
TrEMBL	A0A371FMI3	0.0	A0A371FMI3_MUCPR; Homeobox protein HAZ1 (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-36	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain