PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g20260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 338aa    MW: 38216.8 Da    PI: 9.7456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g20260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.2e-121771798
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     ++pk+f++++gg       l l+ ++g +We+    +k s + ++l+kGWkeF+    L  g  v+F+++++ +    v++++
  Vradi08g20260.1  1 MIPKEFTRKYGGRL--LNPLFLKVPDGIEWELCW--TKDSTGnVWLEKGWKEFATYYSLGYGHLVTFTYQQTCTL--EVHIYN 77
                     69********9884..456************999..7777767*************************9885555..777665 PP
2B352.87.3e-17160238895
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      + +    +lv+p  f++++ +k+++++++ l+ ++gr+W v+l  ++++    + kGW+ Fv+ n L++gD+++F+l++++   +++k
  Vradi08g20260.1 160 ETNVHGYILVIPSIFTKKY-LKETGKQDILLQVLDGRTWHVTL--KNGK----FFKGWRTFVSHNYLNVGDVCIFELTESK--APCFK 238
                      34444557***********.4566778****************..7777....557********************97532..23443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023621.8E-9177IPR003340B3 DNA binding domain
SMARTSM010190.0026179IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-15179IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-13177No hitNo description
PROSITE profilePS5086313.31179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-15279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-20148242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-19148243IPR015300DNA-binding pseudobarrel domain
CDDcd100174.18E-19152243No hitNo description
PROSITE profilePS5086311.829153245IPR003340B3 DNA binding domain
SMARTSM010194.4E-8154245IPR003340B3 DNA binding domain
PfamPF023623.8E-14157238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MIPKEFTRKY GGRLLNPLFL KVPDGIEWEL CWTKDSTGNV WLEKGWKEFA TYYSLGYGHL  60
VTFTYQQTCT LEVHIYNTSA VQINYPSNST QNSSSNVLFG VAPTSPSLPR PSKKPRTHPS  120
RVVGQRSGLP QHVQVKADLL QENSGATRSE TPSFMVTLKE TNVHGYILVI PSIFTKKYLK  180
ETGKQDILLQ VLDGRTWHVT LKNGKFFKGW RTFVSHNYLN VGDVCIFELT ESKAPCFKVS  240
IIPISQDKCS SSQDREYVDF TKIQDLRCIN TFSIKGAGYF PWSNQLQVTS PAYSSFPCKL  300
LPASHVQVRV YDITQSHKLL LSSSLHQQAK KMNCTKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g20260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513154.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_022641426.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_022641427.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_022641428.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_022641429.10.0B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A1S3V4S70.0A0A1S3V4S7_VIGRR; B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A3Q0FFL80.0A0A3Q0FFL8_VIGRR; B3 domain-containing transcription factor VRN1 isoform X2
STRINGXP_007143080.12e-66(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-13B3 family protein