PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g20040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 277aa    MW: 29849 Da    PI: 8.3933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g20040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012116138123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F++   L  H  +H
  Vradi08g20040.1 116 HRCTVCNKAFPSYQALGGHKASH 138
                      79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-7116189No hitNo description
PROSITE profilePS501579.369116143IPR007087Zinc finger, C2H2
SMARTSM003550.019116138IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-13116140IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SMARTSM003550.19167189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411167189IPR007087Zinc finger, C2H2
PfamPF139122.8E-13167191IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNVHTPKQKK GKDNADRHIT VPSLMALEAL NSPTAPAAPF RSYQEEEELD LQFREPWSKR  60
KRSKRPRLET EEEYLALCLI MLAQGGNNTN TNTSSHRQTQ QSESQKEPSP PLKLSHRCTV  120
CNKAFPSYQA LGGHKASHRK SSSESTSASA VASDSVTAST VGGGRMHECS ICHKSFPTGQ  180
ALGGHKRCHY DGGNHHSNSN ALTSSSDGVG GGAASSHTLR GFDLNLPAPL TEFWPPVGFD  240
FRKKVGGGDE QEVESPLPIN AAKKARLFSG DDDQTA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g20040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512177.10.0zinc finger protein ZAT10
TrEMBLA0A1S3V1W60.0A0A1S3V1W6_VIGRR; zinc finger protein ZAT10
STRINGXP_007143110.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-37salt tolerance zinc finger