PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19780.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27529.5 Da    PI: 8.698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.2e-231765149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ +n+sn qvtfskRr+g++KKA+EL++LC+a+va+++fs+  k++ +
  Vradi08g19780.1 17 KKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSF 65
                     5689***************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.46969IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-32968IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-281083IPR002100Transcription factor, MADS-box
CDDcd002652.50E-361078No hitNo description
PRINTSPR004042.9E-191131IPR002100Transcription factor, MADS-box
PfamPF003198.7E-241965IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-193146IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-194667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSSDTKKSRG RQKIEMKKMS NESNLQVTFS KRRTGLFKKA SELCTLCAAD VALVVFSPGE  60
KVFSFGHPNV DAVIDRYLAR APPQDMGTMQ FIEAQRMANV RDLNAQLTQI NAQLEEGRQH  120
GEELNRITKE SQAQLWWAQP IEKMSLAQME QYKAALEELK KLVAHLADRA MLETATNQGR  180
QFFPGAPSSS NLLHYPHPSP VFPQPLIQPP MLQNFMLPDG SIVGHQGFNH MEMGGYAPGP  240
GPSGAFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-161088280MEF2 CHIMERA
6byy_B3e-161088280MEF2 CHIMERA
6byy_C3e-161088280MEF2 CHIMERA
6byy_D3e-161088280MEF2 CHIMERA
6bz1_A3e-161092284MEF2 CHIMERA
6bz1_B3e-161092284MEF2 CHIMERA
6bz1_C3e-161092284MEF2 CHIMERA
6bz1_D3e-161092284MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511965.20.0agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-62AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A1S3V0Y20.0A0A1S3V0Y2_VIGRR; agamous-like MADS-box protein AGL62
STRINGXP_007143148.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-65AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]