PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi08g19760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25621.2 Da PI: 9.4102 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.6 | 2.1e-20 | 18 | 65 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ks qvtfskRr g++KKA+EL++LC++e+a+++fs+ +k + + Vradi08g19760.1 18 KIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSF 65 57789999*********************************9987655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-28 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.918 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-25 | 10 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.36E-31 | 10 | 77 | No hit | No description |
PRINTS | PR00404 | 2.3E-16 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-22 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MSKNKKCSLG RQKIPIEKIP KKSHLQVTFS KRRSGVFKKA SELCTLCGVE IAIVVFSPAD 60 KAFSFGHPEV ESLIDRYTTR NPPQDSSAQH LVEAHRNANV RDLNMQLTQL FNLLEVEKKR 120 GDDLDHMRKA RQKQFWWESP VDDLGLHELL QLKASTEDLK NNIEKHASKF IVDRSSALSS 180 SSIIAPSNGF AAIERYDAFD NKPDVGIPMA SSPPDAHYLA FRNWYL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-16 | 9 | 94 | 1 | 87 | MEF2C |
5f28_B | 2e-16 | 9 | 94 | 1 | 87 | MEF2C |
5f28_C | 2e-16 | 9 | 94 | 1 | 87 | MEF2C |
5f28_D | 2e-16 | 9 | 94 | 1 | 87 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi08g19760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014513136.1 | 1e-169 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 3e-52 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S3V459 | 1e-168 | A0A1S3V459_VIGRR; agamous-like MADS-box protein AGL62 | ||||
STRING | GLYMA20G27350.2 | 1e-135 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-54 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
---|---|---|---|
|