PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CPP
Protein Properties Length: 788aa    MW: 86499.9 Da    PI: 6.5
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.15.3e-16498536240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk 
  Vradi08g19620.1 498 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKP 536
                      689**********************************96 PP
2TCR505.7e-16583622140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Vradi08g19620.1 583 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTY 622
                      589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.2E-19497538IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.562498623IPR005172CRC domain
PfamPF036381.7E-11500535IPR005172CRC domain
SMARTSM011142.6E-17583624IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-11585621IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MDTPDRSKIN NPLSQFEDSP VFNYISNLSP IEPVKSVHIT QTFNSLSFSS PPSVFTSPHV  60
NCHRESRFLR RHNLLDASKA KASSEDINNV YSCEKTPADS TQPCHESSEP QENTNPNISI  120
RDASIEPHDE NPNISIEVPQ GLKYNLASPG FEPVICADEA DSLLELPGKP GSDVAYVPDD  180
SEKDSIEGEM HPPALCQTEE KIEGSNCGVD DLINEASDLL MFSPPNMTEA FKDINKQLNP  240
STKLTNLRTL LRQSATNDGQ QMHIVDTVAS GSEHEIENHP CESGAATDTV QRQDKHNNVA  300
LVANNPIEKV DDKLVYVTHR GIRRRCLDFE MASVQRKNLD GKSNTNSSKE KSEEMDVSKG  360
KQLLPIKHSG DSRKCVLPGI GLHLNALASL NDCKNIKIET LLSGRQPNLP SSSSSLQLSA  420
SQDHQLSLVP TSVEKDLEQS ENEVQPGEDC TQPLVHMSGE DCTQALVHMP GEDFQQNSPK  480
KKRQIYRRRL EPDGEGESCK RCNCKKSKCL KLYCECFAAG VYCIEPCSCR DCFNKPIHVD  540
TVLQTRQQIE SRNPLAFAPK VIRGSDSVPE IGDDPNKTPA SARHKRGCNC KKSSCLKKYC  600
ECYQGGVGCS ISCRCEGCKN TYGRKDGSVH SGIEAKPEEE TEACEKGVME KASHKTETQN  660
TEDHPDHALP TTPLRLSRSL IPLPFSSKGK PPRSFVTTIS SSGLFVSQKL GKSSAPRSQP  720
KFEMPLQTVP DDDSPVTCIK TSSPNGKRIS SPNCDVGSSP TRRGGRKLIL QSIPSFPSLT  780
PHNLRSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1750262014120Protein lin-54 homolog
5fd3_B8e-1750262014120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514554.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A1S3V8S60.0A0A1S3V8S6_VIGRR; protein tesmin/TSO1-like CXC 3
STRINGXP_007143298.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-109TESMIN/TSO1-like CXC 2