PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 359aa    MW: 41182.8 Da    PI: 5.9544
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.61.2e-30451512103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT....T..EEE---SSBTTTTXTTSEEEEESXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY....g..FkkvkdeekkskskekiweFkhksFkkg 89 
                      Fl+k+y+i++d++++++isws+ +nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+Y       F  ++ +  k k +++ weF+++ F +g
  Vradi08g19520.1  45 FLTKTYDIVDDPSTNHIISWSKGNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYvsntSfyFPIIQYHGFK-KVDPDKWEFANEMFLRG 137
                      9**********************************************************44332213333333332.33699************ PP

                      XXXXXXXXXXXXXX CS
     HSF_DNA-bind  90 kkellekikrkkse 103
                      ++ ll++i+r+k++
  Vradi08g19520.1 138 QRILLKSIRRRKTN 151
                      ***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-3538142IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3141148IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5041148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-144568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2745148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-148395IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-1496108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNPQGPVKEE FLGESSSFYA GYDPPPIMIV PQPVQGLHQT APPPFLTKTY DIVDDPSTNH  60
IISWSKGNNS FIVWDPQAFS VTLLPRFFKH NNFSSFVRQL NTYVSNTSFY FPIIQYHGFK  120
KVDPDKWEFA NEMFLRGQRI LLKSIRRRKT NHQSHAMQQG VDPCVEVGLF GLDGEVDRLK  180
RDRQVLMAEL VKLRQQQQNT RVHIQAMEGR LKRTEQKQQQ TMNFLARAMQ NPNFVQQLVQ  240
QKELRKELKE AFSKKRRSLD QGPSNVVEIG ELDCGEEYSS LVKLEAQVLD FEVPDLDLGL  300
NLGEQIGSQK RMEEVESMDK DIDEVFWQDL LNEGIEEQGV MGVDVLARQL GYLASSSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-224315027131Heat shock factor protein 1
5d5v_B2e-224315027131Heat shock factor protein 1
5d5v_D2e-224315027131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512523.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3V2F50.0A0A1S3V2F5_VIGRR; heat stress transcription factor A-6b-like
STRINGXP_007143314.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-117heat shock transcription factor A6B