PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19210.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27476.7 Da    PI: 9.2449
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.8e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ie+ + rqvtfskRrng+lKKA+ELSvLCda+vavi+fs++g+lye+ss
  Vradi08g19210.1  9 KKIEDATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSS 59
                     68***********************************************96 PP
2K-box47.38.7e-17831521180
            K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                      +   ++l+ e+a++ ++i+ L+ ++R+llG++++ +s+ eL+++e+qL++sl ++R++K+  ll++  +l
  Vradi08g19210.1  83 DDYIQQLKLESANMAEKIQLLEISKRKLLGQSVSCCSYDELKEIEDQLQRSLLRVRQRKESNLLQENAKL 152
                      5678999*****************************************************9999887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-33374IPR002100Transcription factor, MADS-box
CDDcd002657.25E-44375No hitNo description
PfamPF003192.2E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.18386199IPR002487Transcription factor, K-box
PfamPF014862.9E-1387153IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVRGKVQMKK IEDATSRQVT FSKRRNGLLK KAYELSVLCD AQVAVIVFSQ NGRLYEFSSS  60
NMSKILERYR EYTKDVPTNK FGDDYIQQLK LESANMAEKI QLLEISKRKL LGQSVSCCSY  120
DELKEIEDQL QRSLLRVRQR KESNLLQENA KLTEMILVFP FTLPPLSTMP PPHTFTSPIS  180
LKLNEDNFLV WKHQALATVT GLHLMKFLES SSYPPKYVTL DAAASDTVNP LYLHHLQQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21174174MEF2 CHIMERA
6byy_B1e-21174174MEF2 CHIMERA
6byy_C1e-21174174MEF2 CHIMERA
6byy_D1e-21174174MEF2 CHIMERA
6bz1_A1e-21174174MEF2 CHIMERA
6bz1_B1e-21174174MEF2 CHIMERA
6bz1_C1e-21174174MEF2 CHIMERA
6bz1_D1e-21174174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-117AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022641359.11e-174MADS-box protein AGL42 isoform X1
RefseqXP_022641360.11e-174MADS-box protein AGL42 isoform X1
SwissprotQ9FIS14e-65AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A3Q0FFE81e-173A0A3Q0FFE8_VIGRR; MADS-box protein AGL42 isoform X1
STRINGGLYMA10G38541.16e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.42e-63AGAMOUS-like 42