PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g19190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 396aa MW: 42083.3 Da PI: 8.7129 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.6 | 7.7e-37 | 132 | 224 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + +ss+++ ++ Vradi08g19190.1 132 TVAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV--GGTLKIPTSSAARPHGED 223 789*************************************************************8888844421..111111111111111111 PP TCP 95 a 95 + Vradi08g19190.1 224 N 224 1 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.512 | 138 | 192 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.7E-29 | 138 | 223 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
SVFYVVSVPI LFILYQFSFI VFNYQNPSSN SELVSNPCSA RKLQTRSTVL NSFALPSSSS 60 RCKTCKKTME SNPTHDGDDT SEKLSPPMVD RPESSSPSPS SPQALQMKEE AMDAEQGVDM 120 SLPVNVIPMP PTVAKRPSKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW 180 LLEHAEPAII EATGTGTVPA IAVSVGGTLK IPTSSAARPH GEDNPKKRRR RASNSEFIDV 240 NENHVSVSSG LAPIAQTAYG GVASGGGGGV VPLWNGNGSG PFFMFPNASN PPQYWAIPAT 300 AAPFFNVQAR PISGFVSALQ MHEQDKPSSN GCASDSVNSS STMGSSMSSV SVTTSAAASS 360 SSAATTTQIL RDFSLEIYDK KELQFLGQAP PSSKP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 230 | KKRRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00064 | PBM | Transfer from AT5G51910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g19190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014513701.1 | 0.0 | transcription factor TCP19 | ||||
Swissprot | Q9LT89 | 4e-78 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A1S3V5Y1 | 0.0 | A0A1S3V5Y1_VIGRR; transcription factor TCP19 | ||||
STRING | XP_007143360.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 2e-74 | TCP family protein |