PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g19120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 206aa    MW: 22063.6 Da    PI: 5.2887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g19120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.1e-134992955
              AP2  9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++++g+Wv+eIr+p++   ++r++lg++  +++Aa+a++ a+++l+g
  Vradi08g19120.1 49 RSRSGKWVSEIREPRK---TTRIWLGTYPAPDMAAAAYDVAALALKG 92
                     5789*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.27E-1444102No hitNo description
PROSITE profilePS5103219.20344100IPR001471AP2/ERF domain
SMARTSM003809.2E-2544106IPR001471AP2/ERF domain
PRINTSPR003673.0E-54556IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-1645102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-2345101IPR001471AP2/ERF domain
PfamPF008472.4E-74992IPR001471AP2/ERF domain
PRINTSPR003673.0E-582102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDGNPFGNVP PPPIQVPDNF PHSSSSSPTP TTSSPSPTPS AGFRYRGTRS RSGKWVSEIR  60
EPRKTTRIWL GTYPAPDMAA AAYDVAALAL KGPDTPLNFP NSILSYPIPA SLSATDIRAA  120
AAAAAQARLV RAPQESGQAV NPDIGQESEK PEEYYDEDEL LNMPNLLDDM ARGMQVVRPY  180
GSTYASCSRL QIRSSVRCNQ LGEPS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g19120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022641352.11e-137ethylene-responsive transcription factor ERF027
SwissprotQ9FJ906e-36ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3Q0FG811e-136A0A3Q0FG81_VIGRR; ethylene-responsive transcription factor ERF027
STRINGGLYMA20G29440.13e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-26ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]