PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g19030.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 794aa MW: 87196.1 Da PI: 5.7404

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g19030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.3	2e-21	68	123	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k Vradi08g19030.1 68 KKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 123 688999***********************************************999 PP
2	START	161.6	5.8e-51	278	527	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++el+k+ +ae+p+W ks e n +e+ ++f++ + + +ea r++g+v+ ++ lve+l+d + +W e+++ +a l Vradi08g19030.1 278 LALAAMEELLKMTQAESPLWIKSLdgekEVFNHEEYARSFSPCIGpkpngYVTEATRETGIVIINSLALVETLMDAN-RWAEMFPsmiaRAINL 370 6899******************876666689***998889***************************.****99999999 PP EEECTT................................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS START 83 evissg................................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143 +vis+g +m ae q+lsplvp R + f+R+++q+ +g+w++vdvS+d+ + + ++++ Vradi08g19030.1 371 DVISNGmggtrngalqvvrfftvymldfvlifagtddqDYTFQMHAEVQLLSPLVPvRQVRFIRFCKQHAEGVWAVVDVSIDVGHDAANAQPFM 464 *********************************9955556889999**********************************999* PP E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++lpSg+++++++ng+skvtw+eh++++++ +h+l+r+l++sg+ +ga +w atlqrqce+ Vradi08g19030.1 465 SCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESGVHQLYRPLLSSGVGFGAHRWIATLQRQCEC 527 ***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-20	52	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-22	54	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	65	125	IPR001356	Homeobox domain
SMART	SM00389	2.3E-19	66	129	IPR001356	Homeobox domain
CDD	cd00086	3.54E-19	67	125	No hit	No description
Pfam	PF00046	4.4E-19	68	123	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.04	268	530	IPR002913	START domain
SuperFamily	SSF55961	1.09E-28	270	378	No hit	No description
CDD	cd08875	1.00E-113	272	526	No hit	No description
SMART	SM00234	1.3E-23	277	527	IPR002913	START domain
Pfam	PF01852	8.7E-42	278	527	IPR002913	START domain
SuperFamily	SSF55961	1.09E-28	412	527	No hit	No description
SuperFamily	SSF55961	3.21E-21	555	787	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MQNSSSFSYS NQRKMEGPSE MGLIGENFDA GLMGRMRDDE YESRSGSDNF DGVSGDDQDG 60 GDDQPQRKKR YHRHTPHQIQ ELESFFKECP HPDEKQRLDL SKRLGLENKQ VKFWFQNRRT 120 QMKTQLERHE NIMLRQENDK LRAENSLMKE AMSNPVCNSC GGPAIPGQIS FEEHQIRIEN 180 ARLKDELNRI CALANKFLGK PISSMTSPMA LPTSNSGLEL GIGRSGLGGS STLGTPLPMG 240 LDLGDGVLGT QTAMPGIRPS LGLMGNEVQL ERSMLIDLAL AAMEELLKMT QAESPLWIKS 300 LDGEKEVFNH EEYARSFSPC IGPKPNGYVT EATRETGIVI INSLALVETL MDANRWAEMF 360 PSMIARAINL DVISNGMGGT RNGALQVVRF FTVYMLDFVL IFAGTDDQDY TFQMHAEVQL 420 LSPLVPVRQV RFIRFCKQHA EGVWAVVDVS IDVGHDAANA QPFMSCRRLP SGCIVQDMPN 480 GYSKVTWLEH WEYDESGVHQ LYRPLLSSGV GFGAHRWIAT LQRQCECLAI LMSSSISSDD 540 HTALSQAGRR SMLKLAQRMT SNFCSGVCAS SARKWDMLHI GTLGDDMKVM TRKNVDDPGE 600 PPGIVLSAAT SVWMPVSRQR VFDFLRDERL RSEWDILSNG GPMQEMVHIA KGQGHGNCVS 660 LLRANAVNAN DSSMLILQET WMDASCSVVV YAPVDVQSLN VVMSGGDSAY VALLPSGFAI 720 VPDGHCNNSS SSCNGTMQKG GGGEESGGSL LTVGFQILVN SLPTAKLTVE SVDTVNNLIS 780 CTIQKIKGAL RVA*

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MQNSSSFSYS NQRKMEGPSE MGLIGENFDA GLMGRMRDDE YESRSGSDNF DGVSGDDQDG  60
GDDQPQRKKR YHRHTPHQIQ ELESFFKECP HPDEKQRLDL SKRLGLENKQ VKFWFQNRRT  120
QMKTQLERHE NIMLRQENDK LRAENSLMKE AMSNPVCNSC GGPAIPGQIS FEEHQIRIEN  180
ARLKDELNRI CALANKFLGK PISSMTSPMA LPTSNSGLEL GIGRSGLGGS STLGTPLPMG  240
LDLGDGVLGT QTAMPGIRPS LGLMGNEVQL ERSMLIDLAL AAMEELLKMT QAESPLWIKS  300
LDGEKEVFNH EEYARSFSPC IGPKPNGYVT EATRETGIVI INSLALVETL MDANRWAEMF  360
PSMIARAINL DVISNGMGGT RNGALQVVRF FTVYMLDFVL IFAGTDDQDY TFQMHAEVQL  420
LSPLVPVRQV RFIRFCKQHA EGVWAVVDVS IDVGHDAANA QPFMSCRRLP SGCIVQDMPN  480
GYSKVTWLEH WEYDESGVHQ LYRPLLSSGV GFGAHRWIAT LQRQCECLAI LMSSSISSDD  540
HTALSQAGRR SMLKLAQRMT SNFCSGVCAS SARKWDMLHI GTLGDDMKVM TRKNVDDPGE  600
PPGIVLSAAT SVWMPVSRQR VFDFLRDERL RSEWDILSNG GPMQEMVHIA KGQGHGNCVS  660
LLRANAVNAN DSSMLILQET WMDASCSVVV YAPVDVQSLN VVMSGGDSAY VALLPSGFAI  720
VPDGHCNNSS SSCNGTMQKG GGGEESGGSL LTVGFQILVN SLPTAKLTVE SVDTVNNLIS  780
CTIQKIKGAL RVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g19030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014514419.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Refseq	XP_022641349.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1S3V8F6	0.0	A0A1S3V8F6_VIGRR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
STRING	XP_007143378.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]