PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g18220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 365aa MW: 40383.7 Da PI: 7.0567 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.6 | 1.3e-08 | 198 | 233 | 5 | 40 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k+++r NRe+A +s +RKk ++ eL++ v+ Le Vradi08g18220.1 198 KKAKRIVANRESAAKSKERKKRYLIELQKNVELLEI 233 899******************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0059 | 194 | 258 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 5.9E-7 | 196 | 246 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.8E-6 | 198 | 237 | No hit | No description |
SuperFamily | SSF57959 | 7.55E-8 | 198 | 245 | No hit | No description |
CDD | cd14703 | 1.12E-13 | 199 | 250 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
PTSVYQFNFS FLYVSTKLQI TNSREKTFST ICVMENNDIL APSDASFFDQ IVATEQPHSP 60 IHSDPSYPLI ETFVDLLNVD TKHFDFEMFN SSLSPPPPTA PLGSVHSETS EKPNEQTSTP 120 APVGSIDGLD CGKSVVSDDL CMAGSAKNSG ENKQKRHRQN VPLDASLTAL MQAAPAISLA 180 RKPMGPEELA ELAMVDPKKA KRIVANRESA AKSKERKKRY LIELQKNVEL LEIQITNVFD 240 NICMLEMANR GRAVHVKERR VKLDVMREED RIKDALSAAL NGEIQGLKDE NRNLQVLLSC 300 SPGNFFSPFS SKLPLHQFHN PPSQQHLNPQ QPQLSMRSPL PPPGSSFTGG HYGPNNFSNF 360 NQKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g18220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512988.1 | 0.0 | bZIP transcription factor 18 | ||||
TrEMBL | A0A1S3V3R2 | 0.0 | A0A1S3V3R2_VIGRR; bZIP transcription factor 18 | ||||
STRING | XP_007143526.1 | 4e-64 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17276 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 2e-27 | bZIP family protein |