PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g17010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 1631aa    MW: 177632 Da    PI: 6.0627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g17010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08763804346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT++E e++ + ++ +G++ +++Ia+ +  ++t  +c+++++k
  Vradi08g17010.1 763 PWTPQEREIFMEKFAVFGKN-FRKIASFLD-HKTTADCVEFYYK 804
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding315.8e-109781017344
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                        WT +E   +++av  +G++ +++Iar++  +R+ +qck ++
  Vradi08g17010.1  978 DWTDDEKAAFLQAVSSFGKD-FAKIARCVR-TRSQEQCKVFF 1017
                       5*****************99.*********.********766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-14747807IPR009057Homeodomain-like
PROSITE profilePS5129315.798759810IPR017884SANT domain
SMARTSM007175.9E-8760808IPR001005SANT/Myb domain
PfamPF002499.5E-6762804IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-5763804IPR009057Homeodomain-like
PROSITE profilePS5129312.1239741025IPR017884SANT domain
SMARTSM007176.4E-89751023IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-99761025IPR009057Homeodomain-like
PfamPF002493.5E-89781017IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-69781017IPR009057Homeodomain-like
CDDcd001672.06E-79791017No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1631 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSSHHRDF NRWGSADFRR PPGHGYAISR  60
SSSDKILEED SRPSISRGDG KYGRSSRENR GPFGQRDWRG HSWEPSNGTV NLPRRPQDMN  120
NDQRAVDDAL GYSSHPHSDF VNSWDQHHLK DQHEKIGSVN GLGTGSRSDR ENSLGDWKPL  180
KWTRSGSLSS RGSGFSHSSS SRSMGAADSH EEKAELQQKS AAANESHSGE AAACATSSVP  240
SEDTASRKKP RLNWGEGLAK YEKKKVEVPD ASANKDGPVL SASITEPCNS LSTSLVDKSP  300
KVIGFSECAS PATPSSVACS SSPGMDDKLF GKTTNVDNDV SNLTCSPAPL SENNLQRFSF  360
NLEKFDIGSL NNLGSSIIEL VQSDDPTSVD SGPMRSNAIN KLLIWKADIS KVLEMTESEI  420
DLLENELKSL KSESGVTCPF AVSLGSQMVG SGEKSFEGHV GVSDQVTRPV PMNIVDDANT  480
EKVPFSTNLH SVHENVKEED IDSPGTATSK FVEPLPVSCG AGGGYVNFSQ DLDSVPSAAV  540
KYLIPCTARK DVIVPCVDGK TSLEVNDSMD ILCGTIISSN KESANKASEV FDNLLPKDCC  600
KIGRMGTSSD TCNQTLIREK FVEKKRFARF KERVIALKFR ALHHLWKEDM RLLSIRKCRP  660
KSHKKNELSV RTTCNGNQKN RSSIRSRFPF PAGNHLSLVP TSEIINFTSK LLSESQVKVQ  720
RNTLKMPALI LDEKEKTISK FVTSNGLVED PLAIEKERSL INPWTPQERE IFMEKFAVFG  780
KNFRKIASFL DHKTTADCVE FYYKNHKSDC FEKLKKQDVG KLGKSFSAKT DLVASGKKWN  840
RELNAASLEI LSAASLMAGG IAGNKKIRAG SSLLGGYGKV KTSRVEDFIE KSGSFDILGD  900
ERETAAAADV LAGICGSLSS EAIGSCITSS VDAVEGSRDR KFLKVNPLYK LPFTPDVTQD  960
VDDETCSDES CGEMDPTDWT DDEKAAFLQA VSSFGKDFAK IARCVRTRSQ EQCKVFFSKG  1020
RKCLGLDLMR PIPENVGSPV NDDANGGESD TDDACVVETG SVVGTEKSGT KTDEDLPLYG  1080
TKTFNDESNP VQARNLSAEL NESKGTDGTE VDIEDANVVS DACAIDIDSK LGCDGSIFAL  1140
CGSVSGQTTV IMSDRTEIRR DKATKLISVP DTSSEPCEIN SFVEDRMVVS EVSSGRPGNE  1200
LERQRVSSPR CLDERDSKQE ADSGVIVDLK SPVHILSTMV NAPVSSFGNS SSGLSSSTEN  1260
KNVPIGQPHT SLLSVDEHQA SSNSFLQNPV ASDIQCEKTA SQDRLSSTCD IQVRNDEQPP  1320
ITGNSSDHVD TGSILQGYPL QAPIKKEMND DMNCSSSAAE LHILSQKIEQ PDDQTKKLQS  1380
LDSDKTSRNG DVKLFGKILT NPSSAQKPNV GAKGSEENGI HHHKFSKPSG VKFAGHNADG  1440
NLKILKFDCN DYVGLENVPM RSYGYWDGNR IQTGLSSLPD SAILLAKYPA AFSNYPTSSA  1500
KLEQPSLQTF SKNNNERLLN GSNAVIDYQM FRRDGQKVQP FMVDVKHCQD VFSEMQRRNG  1560
FETISSLQQQ SRGVMGMNGV GRPGILVGGS CSGVSDPVAA IKMHYSNSDK YGGQSGSIAR  1620
EDESWGGKGD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C5e-18721812494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D5e-18721812494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g17010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513300.10.0uncharacterized protein LOC106771825 isoform X1
TrEMBLA0A1S3V4T10.0A0A1S3V4T1_VIGRR; uncharacterized protein LOC106771825 isoform X1
STRINGXP_007143686.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-175MYB family protein