PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16880.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 607aa    MW: 66502.3 Da    PI: 7.4526
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23118219199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + 
  Vradi08g16880.1 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL--RA 207
                      89****************************986445444..8************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  Vradi08g16880.1 208 ENGDLCVGIRRA 219
                      88999****997 PP
2Auxin_resp112.73.4e-37276357383
       Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        a ++ +FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Vradi08g16880.1 276 ACAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 357
                      5677999*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-30107219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-38111221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-22117218No hitNo description
PROSITE profilePS5086313.253118220IPR003340B3 DNA binding domain
PfamPF023621.4E-21118219IPR003340B3 DNA binding domain
SMARTSM010191.8E-20118220IPR003340B3 DNA binding domain
PfamPF065079.2E-33275357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MFKVMENMER GSERCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAN GKVDFGQTRV  60
PPLVPCRLSA MKYMADPDTD EVYVKMRLIP LREHELDLED DCFLGNTVEG QEKPPTSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTIIA KDMHGQCWKF RHIYRGTPRR  180
HLLTTGWSNF VNQKRLVAGD SIVFLRAENG DLCVGIRRAK KGIGGGSEFS SGWNPLFGGG  240
SGFLCGSESN LVGGVKGGGD EMVGRVAAES VVEAVACAVN GRPFEVVYYP RASSPEFCVK  300
ASVVKAAMQI QWCSGMRFKM PFETEDSSRI SWFMGTISSV QVADPIRWPD SPWRLLQVVW  360
DEPDLLQNVK CVNPWLVELV SNMPTFNLSA YSPPRKKQRF LHDPYFQVIN QLPMPSFSSN  420
LLNYTNSLCN IENSSSAGIQ GARHAQFGLS PSDFPFNKLP TDMLLGGFSR LDHATKPVRP  480
PCGTYKNSTS NTSTKTNVDI SCLLTVGNPI PNFKESNATK APHILLFGKL IHTEQKSSNT  540
SSASTTGNSV SEGNSLKTSN ASDGLGSAVH QNSPIENNSD GGSPWYKDQH KADLGSDNVN  600
TLCIAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-79237837388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g16880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514894.10.0auxin response factor 22
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3V9S50.0A0A1S3V9S5_VIGRR; Auxin response factor
STRINGXP_007143708.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]