PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 519aa    MW: 59593.9 Da    PI: 6.0585
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.92.8e-28115200187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l L+e+r++++ ++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Vradi08g16250.1 115 RWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQLEA 200
                      8*************************************7778*****************************8..55667*******85 PP
2trihelix461.3e-14430498168
         trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                      rWt+ e+  Li++r+  e+r+r+ g l+ +lW+e+s+k+   gf rs  +Ck+ w++++   +++ +  
  Vradi08g16250.1 430 RWTEMEISNLIQLRSGFEQRFREnGYLENGLWDEISAKLGCLGFDRSGSECKQIWDEISISLRRTVDEC 498
                      8*********************8568********************************99999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.5112175IPR001005SANT/Myb domain
PROSITE profilePS500906.888114173IPR017877Myb-like domain
CDDcd122031.30E-20114180No hitNo description
PfamPF138372.6E-19114201No hitNo description
PROSITE profilePS500906.853423488IPR017877Myb-like domain
SMARTSM007170.18427490IPR001005SANT/Myb domain
CDDcd122033.38E-14429494No hitNo description
PfamPF138377.2E-9429501No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MGDPYGLPED LRRFIPPRTH MNPSSTHLLE PLCLHHGLSP VAAATTIPPN TYDHNMVGDV  60
FFPRAFTHFS HHHDYSSSSG VNPTNAATAA VSDHAFCSME SAEKGWFGFD SGNNRWPRQE  120
TLSLLEIRSR LDCKFRENNQ KAPLWNEISR IMAEEFGYQR SGKKCKEKFE NLYKYYKKTK  180
EGKASRQDGK HYRFFRQLEA ICGDQANTNH ASTSDKTHRA GANNGNIQTP TFAINQEHNG  240
DSSNNPKCSE SISISNSSEF ETSSSENNEE DLSAIAFMMR QSREKQKALL DERQSDHRRL  300
RKSWRAKVEE IVDSHMRKII ETQDAWMERM LSVVEQREQE MSSKEEERKR KESMWFDQQV  360
HEXWAKEKAW VEARDAALIE VVRKHVGIEL EALPLDEAMV EEAGNKNKGE GKIESSEFPS  420
EGVDQRSSSR WTEMEISNLI QLRSGFEQRF RENGYLENGL WDEISAKLGC LGFDRSGSEC  480
KQIWDEISIS LRRTVDECDG GKRRPWYLGL RVTDDDDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g16250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512554.10.0trihelix transcription factor PTL
TrEMBLA0A1S3V3290.0A0A1S3V329_VIGRR; trihelix transcription factor PTL
STRINGXP_007143826.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-77Trihelix family protein